PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g15540
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 168aa    MW: 18264.8 Da    PI: 9.1553
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g15540genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.001684106123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                + C +Cg  F+    L  H+r+H
  Tp5g15540  84 HICLICGLEFPMGQALGGHMRKH 106
                68********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.19E-633106No hitNo description
PfamPF139125.6E-103458IPR007087Zinc finger, C2H2
SMARTSM003551.13557IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.3693557IPR007087Zinc finger, C2H2
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
SMARTSM003550.7184106IPR015880Zinc finger, C2H2-like
PfamPF139122.2E-984107IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.15984111IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MYARSEDLDQ TAAICPMLLS TVGERGGDGG ESRVFRCKTC MKEFSSFQSL GGHRASHNKT  60
FNNTNDQQSS LSSGSVTKKK TKSHICLICG LEFPMGQALG GHMRKHRNEK ETGALVTRCF  120
LPEATATTST FTTLKKPSSG KRVACSDLGS DSMESTINLK LELGRTIY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g15540
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009150251.17e-73PREDICTED: zinc finger protein ZAT8-like
RefseqXP_013646942.17e-73zinc finger protein ZAT8-like
SwissprotQ9LX852e-65ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLM4DSI42e-71M4DSI4_BRARP; Uncharacterized protein
STRINGBra019477.1-P3e-72(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20281876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.16e-61C2H2 family protein