PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp5g15880

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

Dof

Protein Properties

Length: 244aa MW: 26708.8 Da PI: 8.9582

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp5g15880	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.8	1e-37	37	97	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e++l+cprCdstntkfCyynnyslsqPryfCk+CrryWtkGG lrn+P+Gg+ rk+++ss Tp5g15880 37 PEQSLRCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGILRNIPIGGAYRKHRRSS 97 67899****************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-29	37	95	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.7E-32	39	95	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.341	41	95	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	43	79	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MDYSSMHQNV VGGVSSCSSQ DYQNQKKPSP AIRPAPPEQS LRCPRCDSTN TKFCYYNNYS 60 LSQPRYFCKS CRRYWTKGGI LRNIPIGGAY RKHRRSSSAT KSLRTTPESP TMMTHDGKTF 120 PAASFGGYNN SINNEQMELG LAFALLNKQP LGFPSDFGSS QTTMGMEGVF GTTQMENAGY 180 AFGNGGGGLE QMATSDPNRV LWGFPWQQMN MAGGGSGHGH VDQIDSGREV WSSTVNYINT 240 GALL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that negatively affects seed germination and opposes TCP14 function in the regulation of a specific set of abscisic acid-related genes (PubMed:22155632). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). {ECO:0000269\|PubMed:22155632, ECO:0000269\|PubMed:30626969}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00392	DAP	Transfer from AT3G45610	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp5g15880

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinin in procambium. {ECO:0000269\|PubMed:30626969}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006419021.1	1e-152	dof zinc finger protein DOF3.2
Swissprot	Q9M1E6	1e-139	DOF32_ARATH; Dof zinc finger protein DOF3.2
TrEMBL	V4L579	1e-151	V4L579_EUTSA; Uncharacterized protein
STRING	XP_006419021.1	1e-152	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6132	18	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45610.1	1e-136	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] de Lucas M, et al. Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation. Plant Cell, 2016. 28(10): p. 2616-2631 [PMID:27650334] Ravindran P,Verma V,Stamm P,Kumar PP A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor. Mol Plant, 2017. 10(10): p. 1307-1320 [PMID:28917589] Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]