PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp5g16170

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

TCP

Protein Properties

Length: 187aa MW: 20877.3 Da PI: 7.2723

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp5g16170	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	103.5	3.5e-32	5	162	3	114
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................................ssss 69 k ++++++h kv+gRdRR+Rl+++ca ++F L++eLGf++d++t+ WLlq+a+pai ++tg s Tp5g16170 5 QKATSSKDRHLKVEGRDRRIRLPVSCASQLFHLTEELGFKTDGETVGWLLQNAEPAIVAATGHglnitsndvmiddpsntshtyiryhnnynctinS--- 101 57899**********************************************************9988888888877654444444333333321110... PP TCP 70 aseceaesssssasnsssg................................kaaksaa.kskksqksaasalnlakes 114 s++ + ++s + + + +q++++ +l+++ e Tp5g16170 102 ----------------SIHrsdgsggvshqrqvlpvatvtgpstfttkdvnQ-KQSVMlPASMPQQQPQPQLQPQFEF 162 ................111222233344445556677777666666666541.2222223333333333222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.3E-27	8	127	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	24.725	10	64	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MENPQKATSS KDRHLKVEGR DRRIRLPVSC ASQLFHLTEE LGFKTDGETV GWLLQNAEPA 60 IVAATGHGLN ITSNDVMIDD PSNTSHTYIR YHNNYNCTIN SSIHRSDGSG GVSHQRQVLP 120 VATVTGPSTF TTKDVNQKQS VMLPASMPQQ QPQPQLQPQF EFAKEEMAAA EQAYVHYLKM 180 KEKNGWN

Functional Description ? help Back to Top
Source	Description
UniProt	Required during early processes in pollen development. {ECO:0000269\|PubMed:16786299}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00390	DAP	Transfer from AT3G45150	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp5g16170

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002875712.1	3e-41	transcription factor TCP16
Swissprot	Q9M1U4	9e-34	TCP16_ARATH; Transcription factor TCP16
TrEMBL	D7LNL1	6e-40	D7LNL1_ARALL; Uncharacterized protein
STRING	scaffold_501359.1	1e-40	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15750	10	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45150.1	2e-36	TCP domain protein 16

Publications ? help Back to Top
Uberti-Manassero NG,Coscueta ER,Gonzalez DH Expression of a repressor form of the Arabidopsis thaliana transcription factor TCP16 induces the formation of ectopic meristems. Plant Physiol. Biochem., 2016. 108: p. 57-62 [PMID:27404135]