PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp5g18130

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

C3H

Protein Properties

Length: 149aa MW: 16309.7 Da PI: 8.7172

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp5g18130	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30.7	5.3e-10	108	129	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 +C f+ ++G+Ck+G++CkF H Tp5g18130 108 QRCTFYVQYGFCKFGSTCKFDH 129 68******************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	11.967	105	132	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.36E-6	105	129	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.2E-7	108	129	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.6E-4	110	129	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MIVKVCSPHM ENRCGDLGGV VKRSQRDQAP LSPAPSSPPQ NVVGATSLYG LIQLSSTTPS 60 LPVVYPSLSF PTGVVQKEQT FPERPGKPER QYYLKKQEIV SLEHIGVQRC TFYVQYGFCK 120 FGSTCKFDHL SASPLADAPV APYPLSTHI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp5g18130

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001323622.1	1e-42	Zinc finger C-x8-C-x5-C-x3-H type family protein
Refseq	XP_020882914.1	2e-42	zinc finger CCCH domain-containing protein 32 isoform X2
Swissprot	Q84W91	7e-43	C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBL	A0A1P8AXN6	3e-41	A0A1P8AXN6_ARATH; Zinc finger C-x8-C-x5-C-x3-H type family protein
TrEMBL	D7LHC9	7e-41	D7LHC9_ARALL; Zinc finger (CCCH-type) family protein
TrEMBL	R0HSN8	5e-41	R0HSN8_9BRAS; Uncharacterized protein
STRING	scaffold_403761.1	1e-41	(Arabidopsis lyrata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.2	2e-43	C3H family protein