PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g21450
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB
Protein Properties Length: 243aa    MW: 27645.1 Da    PI: 5.2261
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g21450genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45.3e-161057148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll +++ ++G g W++++++ g++R++k+c++rw++yl
        Tp5g21450 10 KGAWTAEEDCLLRQCIDKYGEGKWHLVPSRTGLNRCRKSCRLRWLNYL 57
                     79********************************************97 PP
2Myb_DNA-binding47.44.5e-1563108148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+ + +E +ll++++k+lG++ W++Ia +++ gRt++++k++w+++l
        Tp5g21450  63 KGKLSSDEVDLLYRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTHL 108
                      678899****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.285561IPR017930Myb domain
SuperFamilySSF466891.03E-277104IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-21760IPR009057Homeodomain-like
SMARTSM007176.8E-15959IPR001005SANT/Myb domain
PfamPF002494.8E-151057IPR001005SANT/Myb domain
CDDcd001671.12E-101257No hitNo description
Gene3DG3DSA:1.10.10.605.6E-2261111IPR009057Homeodomain-like
PROSITE profilePS5129419.23362112IPR017930Myb domain
SMARTSM007172.5E-1462110IPR001005SANT/Myb domain
PfamPF002491.2E-1363108IPR001005SANT/Myb domain
CDDcd001674.12E-1067108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MDAPWNRLRK GAWTAEEDCL LRQCIDKYGE GKWHLVPSRT GLNRCRKSCR LRWLNYLKPS  60
IKKGKLSSDE VDLLYRLHKL LGNRWSLIAG RLPGRTANDV KNYWNTHLNK KPDLSCKTEM  120
EERNPTGSAA TPDPKVNVIK PQPRSFCSNN HLSRVNSLPE VEVNVSITGN NDEEVLYDLV  180
ENVMDGESMW WESLLEENRG ADAVDPAGMA IDEAGTSLMN SSSSMFDTEQ LWSLYNEETG  240
ELD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-2481135109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g21450
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4034511e-103KM403451.1 Brassica rapa cultivar Zi He anthocyanin R2R3-MYB transcription factor (MYB3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018461613.11e-106PREDICTED: transcription factor MYB114-like
SwissprotQ9FNV92e-90MY113_ARATH; Transcription factor MYB113
TrEMBLE5D8F55e-98E5D8F5_BRAOB; MYB2
STRINGXP_010513543.11e-101(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.18e-93myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]