PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g22030
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family LBD
Protein Properties Length: 250aa    MW: 27311.1 Da    PI: 7.5478
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g22030genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26097.21.7e-304106198
     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                +C++C+vlr++C+++C ++p++     +++q++++ +++k++G++ +++ll+a p++ r+++++sl+yeA+ r+ +P+yG+vg++++++++l+q+++e++
  Tp5g22030   4 SCNGCRVLRKGCSENCSIRPCLqwiksAESQANATVFLAKFYGRAGLMNLLNAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVEAV 103
                6*********************9999777889*****************************************************************998 PP

     DUF260  96 llk 98 
                +++
  Tp5g22030 104 MRG 106
                766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.9933109IPR004883Lateral organ boundaries, LOB
PfamPF031957.2E-254104IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKS AESQANATVF LAKFYGRAGL MNLLNAGPDH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GNWHLCQAAV EAVMRGSPVT PIACDAAVTG  120
QAPPFNNNNN KLFDIRHVSR DENAVKSRCR SSRGGACKEE RNVRSSLSHE SSLSHESTVV  180
KDEGSMVSSE ETTTEEPSWL GLELTLGLEP PVARGSHVVV PIKKRKLERC GTCDDDDDTC  240
KIELGLVCSE
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g22030
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738701e-135AB473870.1 Arabidopsis thaliana ASL37 mRNA for ASYMMETRIC LEAVES2-like 37 protein, complete cds.
GenBankAK2296501e-135AK229650.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL19-73-A22.
GenBankBT0109431e-135BT010943.1 Arabidopsis thaliana At1g67100 gene, complete cds.
GenBankBT0116501e-135BT011650.1 Arabidopsis thaliana At1g67100 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013688081.11e-159LOB domain-containing protein 40
SwissprotQ9ZW961e-130LBD40_ARATH; LOB domain-containing protein 40
TrEMBLA0A078FI261e-158A0A078FI26_BRANA; BnaA02g12850D protein
TrEMBLA0A398A9V51e-158A0A398A9V5_BRACM; Uncharacterized protein
STRINGBo2g055410.11e-157(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152481518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.11e-115LOB domain-containing protein 40