PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g22190
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family TCP
Protein Properties Length: 362aa    MW: 41178.5 Da    PI: 4.721
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g22190genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP132.15.2e-41852342128
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..........eaesssssasnsssg... 88 
                a+kkdrhskihT++g+RdRRvRls+ +a++fFdLqd+LGfdk+skt++WLl+++ +aikel++ +  s+++           e+e++++       +   
  Tp5g22190  85 AVKKDRHSKIHTAQGLRDRRVRLSIGIARQFFDLQDMLGFDKASKTLDWLLKKSRRAIKELVQEKKLSNNDEdfgnnggdveEEEEEEE-------Eede 177
                89**************************************************************5555533333433332221122222.......1223 PP

        TCP  89 ................kaaksaakskksqksaasalnlak.esrakarararertre 128
                                ++   + k+  +++++ + +n++   srakar +a+e tr+
  Tp5g22190 178 dgdksfvygsgpdsceEEVVCEVKKAAKRTKKIELSNISSkGSRAKARGKAKEITRD 234
                445678999999766544444445555555555556655568889999999998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.9E-4086234IPR005333Transcription factor, TCP
PROSITE profilePS5136935.74387145IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MSSSNNDYNN CNNNGVYPLS LYLSSLSGHQ DVIRNPYNHQ LAASPSQMIS AVPESLIDYM  60
AFNSNNSVGQ EGFEIPEVTR EVKKAVKKDR HSKIHTAQGL RDRRVRLSIG IARQFFDLQD  120
MLGFDKASKT LDWLLKKSRR AIKELVQEKK LSNNDEDFGN NGGDVEEEEE EEEEEDEDGD  180
KSFVYGSGPD SCEEEVVCEV KKAAKRTKKI ELSNISSKGS RAKARGKAKE ITRDMTYDHP  240
ETVSEITQTE IMDPLNRSIV FSKGEDMTHS VYKEAIQEFD NQEYILTKTK VNFPTNIDQS  300
YSQQYGTFML KDQGSSSNYN TILPQNLEFD YDQNPFIDQP FCATTDTNFH RGKVWIQDSS  360
IS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-1492145154Putative transcription factor PCF6
5zkt_B5e-1492145154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in petal morphogenesis. {ECO:0000269|PubMed:17940055}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g22190
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009127539.10.0PREDICTED: transcription factor TCP1-like
SwissprotQ9FYG71e-171TCP1_ARATH; Transcription factor TCP1
TrEMBLM4EYW80.0M4EYW8_BRARP; Uncharacterized protein
STRINGBra034010.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67332744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.11e-137TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]