PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g22700
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ARR-B
Protein Properties Length: 533aa    MW: 59894.9 Da    PI: 5.054
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g22700genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like82.64.4e-26190244155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                k+r++W+ eLH++Fv+av+q+G  +kA Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  Tp5g22700 190 KARVVWSFELHQKFVNAVNQIGCDHKAGPKKILDLMNVPWLTRENVASHLQKYRL 244
                68****************************************************8 PP
2Response_reg80.27e-27121181107
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+p+ +++l+++l+k  y ev+++  ++eal+ll+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ Ga 
     Tp5g22700  12 VLVVDDDPTWLKILEKMLKKCSY-EVTTCGLAREALRLLRERKdgYDIVISDVNMPDMDGFKLLEHVGLEL-DLPVIMMSVDGETSRVMKGVQHGAC 106
                   89*********************.***************999999**********************5543.7************************ PP

                   EEEESS--HHHH CS
  Response_reg  96 dflsKpfdpeel 107
                   d+l Kp+ ++el
     Tp5g22700 107 DYLLKPIRMKEL 118
                   *******99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363926.1E-1491520IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23002.1E-439133No hitNo description
SuperFamilySSF521721.99E-359131IPR011006CheY-like superfamily
SMARTSM004485.6E-3210122IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.75511126IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.0E-2412119IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.52E-3113126No hitNo description
Gene3DG3DSA:1.10.10.608.4E-28187249IPR009057Homeodomain-like
SuperFamilySSF466893.58E-16188248IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-22190244IPR006447Myb domain, plants
PfamPF002492.1E-7192243IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MEKGFSPVGL RVLVVDDDPT WLKILEKMLK KCSYEVTTCG LAREALRLLR ERKDGYDIVI  60
SDVNMPDMDG FKLLEHVGLE LDLPVIMMSV DGETSRVMKG VQHGACDYLL KPIRMKELKI  120
IWQHVLRKKL QEVRDIEGCC YEGGADWITR NDEAHFLGGG EDVSFGKKRK DFDFEKKLLQ  180
DESDPSSSKK ARVVWSFELH QKFVNAVNQI GCDHKAGPKK ILDLMNVPWL TRENVASHLQ  240
KYRLYLSRLE KEKELKCYSG GVKNMDSPPK DAECNSGHQS PGKSSYAFSG GSSLLHKATE  300
TDPNPLASAS MSDPNSDVHM PPKAKKTRIG FDHPISSRAF DSLLPWNDVP DPLDSKPPIL  360
YENSFLQQQP LPSHSSYVAN SAPSLMEEEM KPSYENPAGG TCVNTDEFLM PQDKSPTVTL  420
QDLDLSAPSA ISCMKLQEFS SDVTNNTESI LRSFNWELPE SHYSGSLATD LDLSWLQGER  480
FLANTGLQNF QFQDYSSSSS LLAELPPHLW FGNERLPDPD EYSLMVDQGL FIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-17186249163ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250, ECO:0000269|PubMed:12610214}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g22700
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0415320.0AB041532.1 Arabidopsis thaliana ARR11 mRNA for response regulator 11, complete cds.
GenBankAK2282160.0AK228216.1 Arabidopsis thaliana mRNA for response regulator 11, complete cds, clone: RAFL14-66-N10.
GenBankBT0087680.0BT008768.1 Arabidopsis thaliana At1g67710 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391233.10.0two-component response regulator ARR11
SwissprotQ9FXD60.0ARR11_ARATH; Two-component response regulator ARR11
TrEMBLA0A087HGC40.0A0A087HGC4_ARAAL; Two-component response regulator
STRINGA0A087HGC40.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80662740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.10.0response regulator 11
Publications ? help Back to Top
  1. Zwack PJ, et al.
    Cytokinin Response Factor 6 Represses Cytokinin-Associated Genes during Oxidative Stress.
    Plant Physiol., 2016. 172(2): p. 1249-1258
    [PMID:27550996]
  2. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]