PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g23150
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family WRKY
Protein Properties Length: 337aa    MW: 38442.8 Da    PI: 5.3797
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g23150genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.21.1e-30208267159
                ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  Tp5g23150 208 MNDGCQWRKYGQKTAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMTILITTYEGTHNHP 267
                58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.9E-33193269IPR003657WRKY domain
SuperFamilySSF1182907.85E-28201269IPR003657WRKY domain
PROSITE profilePS5081129.023203269IPR003657WRKY domain
SMARTSM007746.1E-37208268IPR003657WRKY domain
PfamPF031062.4E-27209267IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MGMDLSLNLE KEKDEEASKH TCEKKEEEEE DDDNDASEDK DDQMVKDDEI EDSCLSSRTR  60
KEENEREELL QMQIEMEHVK EENTRLRKLV EQTLQDYRQL EMKFPIIDQT NKMDLETFLG  120
AQAKARKRGV ERSASLTMLD GELGLSLSLQ KKQKQEENKE AESHNKQRYN KSSLIQGQDT  180
NTQRVITSIP GNRKARVSVR ARCETATMND GCQWRKYGQK TAKGNPCPRA YYRCTVAPGC  240
PVRKQVQRCL EDMTILITTY EGTHNHPLPV GAPAMASTAS TSPFLLLDSS DNLSHPSYSQ  300
QNGSNNRSIR SLINFDDPSS RGGEHVSSSQ NRLNWMM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-23195271176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g23150
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by potassium deprivation. {ECO:0000269|PubMed:15173595}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300320.0KF430032.1 Brassica rapa WRKY transcription factor 9 (WRKY9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590991.10.0PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 9
SwissprotQ9C9F01e-158WRKY9_ARATH; Probable WRKY transcription factor 9
TrEMBLA0A3P6BRV80.0A0A3P6BRV8_BRACM; Uncharacterized protein (Fragment)
STRINGBra004285.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67362741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.11e-129WRKY DNA-binding protein 9