PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g23300
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 219aa    MW: 24388.6 Da    PI: 5.4152
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g23300genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.73.1e-11110156354
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                +a n++E+rRR +i++++e+L++l P++     kK + a+ L   veYI+s+
  Tp5g23300 110 QARNIAEKRRRTDIKTKIENLKQLTPNC-----KKRDIASSLDCIVEYIRSM 156
                689*************************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.2E-11104164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.554107156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.09E-11109165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-8110156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.03E-9110157No hitNo description
SMARTSM003532.2E-8113164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MDNNDQESLQ FWSALLQSLA GSDPKNDLCP ETSNPILVMS TSMAIDVPPE PSHAPGDGNK  60
AGPRNDVAEI GDKNVNETGQ RSTEKQIEEE NKEGAKEETK SLGKRPRTNQ ARNIAEKRRR  120
TDIKTKIENL KQLTPNCKKR DIASSLDCIV EYIRSMKLYV ESQSMGPMLP LGMKMDFPAP  180
WFPFFHPNFI MPPQLPPQPP PPLPPFNGFT SGETSGQNQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g23300
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022568090.13e-96putative transcription factor bHLH056 isoform X1
TrEMBLA0A3P6BJX13e-94A0A3P6BJX1_BRACM; Uncharacterized protein
STRINGBo6g097200.19e-95(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1574077
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28800.11e-13bHLH family protein