PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g23580
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family LBD
Protein Properties Length: 232aa    MW: 25513.8 Da    PI: 8.22
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g23580genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.55.5e-304104196
     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                +C++C+vlr++C++dC+++p++     p++q++++ +++k++G++ +l+l+++ p++ r+++++sl+yeA+ r+ +Pv G+vg+++++++  +q++++ +
  Tp5g23580   4 SCNGCRVLRKGCNQDCTIRPCLqwiksPDSQANATLFLAKFYGRAGLLNLIESGPDHLRPAIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQAAVDSV 103
                6*********************************************************************************************999876 PP

     DUF260  96 l 96 
                l
  Tp5g23580 104 L 104
                5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.7373109IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-234101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MRISCNGCRV LRKGCNQDCT IRPCLQWIKS PDSQANATLF LAKFYGRAGL LNLIESGPDH  60
LRPAIFRSLL YEACGRIVNP VDGSVGLMWS GNWAQCQAAV DSVLNGLPIT HTPLPSASAS  120
HQIIPPHRTY DIRHVAKDPT TGGDSSQSLP LAPRVNGSKT KTQTGRFKRL ADETVNYQLG  180
ECSHDTWQHQ SSGQFALETV ESRREAPLNR SSNLGFYDQV DINEVGLELR LG
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g23580
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738691e-161AB473869.1 Arabidopsis thaliana ASL36 mRNA for ASYMMETRIC LEAVES2-like 36 protein, complete cds.
GenBankAF4478961e-161AF447896.1 Arabidopsis thaliana LOB DOMAIN 42 (LBD42) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391131.11e-153LOB domain-containing protein 42
SwissprotQ9CA301e-146LBD42_ARATH; LOB domain-containing protein 42
TrEMBLV4KF161e-152V4KF16_EUTSA; Uncharacterized protein
STRINGXP_006391131.11e-153(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84632639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.11e-148LOB domain-containing protein 42