PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp5g23740

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

bZIP

Protein Properties

Length: 447aa MW: 50246.5 Da PI: 6.2359

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp5g23740	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31	5.7e-10	160	201	4	42
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeaeN 42 ++ rr+++NReAAr+sR+RKka++++Le+ + ++Le+e Tp5g23740 160 QRALRRLAQNREAARKSRLRKKAYVQQLENsriRLAQLEEEL 201 56789************************8333455555543 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.3E-7	153	203	No hit	No description
SMART	SM00338	4.5E-6	157	228	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	1.6E-5	158	202	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.278	159	203	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.26E-6	161	204	No hit	No description
PROSITE pattern	PS00036	0	164	179	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	4.3E-28	246	319	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009909	Biological Process	regulation of flower development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MQSSFKTVPF NPDFYSQASF FFRGDSCLEE FHQPANGFHH DEAIGLSPNV TIASNNLHYT 60 TFDTAMECGL RERLEGEEEC LDTGQLVYQR GTRLVGGVGE MNSSLEKWCD SVSAMADNSQ 120 HTDTSTDIDT DDKTQLNGVH QGMLLATNCS DQSKVKSSEQ RALRRLAQNR EAARKSRLRK 180 KAYVQQLENS RIRLAQLEEE LKRARQQGCS VESGVSGDHN HLAAANGAFS FELEYARWME 240 EHQRLINDLR AGVNSQLGDN DLRVLVDAVM SHYDEIFRLK GMGTKVDVFH MLSGMWKTPA 300 ERFFMWLGGF RSSELLKILG NHVDPLTDQQ LIGICNLQQS SQQAEDALSQ GMEALQQSLL 360 ETLSSASMGP NSSANVADYM GHMAMGMGKL GTLENFLRQA DLLRQQTLQQ LHRILTTRQA 420 ARAFLVIHDY ICRLRALSSL WLARPRD

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MQSSFKTVPF NPDFYSQASF FFRGDSCLEE FHQPANGFHH DEAIGLSPNV TIASNNLHYT  60
TFDTAMECGL RERLEGEEEC LDTGQLVYQR GTRLVGGVGE MNSSLEKWCD SVSAMADNSQ  120
HTDTSTDIDT DDKTQLNGVH QGMLLATNCS DQSKVKSSEQ RALRRLAQNR EAARKSRLRK  180
KAYVQQLENS RIRLAQLEEE LKRARQQGCS VESGVSGDHN HLAAANGAFS FELEYARWME  240
EHQRLINDLR AGVNSQLGDN DLRVLVDAVM SHYDEIFRLK GMGTKVDVFH MLSGMWKTPA  300
ERFFMWLGGF RSSELLKILG NHVDPLTDQQ LIGICNLQQS SQQAEDALSQ GMEALQQSLL  360
ETLSSASMGP NSSANVADYM GHMAMGMGKL GTLENFLRQA DLLRQQTLQQ LHRILTTRQA  420
ARAFLVIHDY ICRLRALSSL WLARPRD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269\|PubMed:19395638, ECO:0000269\|PubMed:19395639, ECO:0000269\|PubMed:9990857}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp5g23740

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK118286	0.0	AK118286.1 Arabidopsis thaliana At1g68640 mRNA for putative bZip transcription factor PERIANTHIA (PAN) / AtbZip46, complete cds, clone: RAFL19-57-M21.
GenBank	BT008586	0.0	BT008586.1 Arabidopsis thaliana clone U50929 putative bZIP transcription factor, PERIANTHIA (At1g68640) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009105416.1	0.0	PREDICTED: transcription factor PERIANTHIA
Swissprot	Q9SX27	0.0	PAN_ARATH; Transcription factor PERIANTHIA
TrEMBL	V4MB25	0.0	V4MB25_EUTSA; Uncharacterized protein
STRING	XP_006391115.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM667	28	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	0.0	bZIP family protein

Publications ? help Back to Top
Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control. Front Plant Sci, 2011. 2: p. 79 [PMID:22645551] Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Wynn AN,Seaman AA,Jones AL,Franks RG Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development. Front Plant Sci, 2014. 5: p. 130 [PMID:24778638] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] de Luis Balaguer MA, et al. Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640 [PMID:28827319]