PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g24700
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family G2-like
Protein Properties Length: 335aa    MW: 38026 Da    PI: 6.9408
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g24700genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.74.8e-322882155
    G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
               kprl+Wt+eLH+rF+eav+qLGG++kAtPk ++++m+++gLtl+h+kSHLQkYRl
  Tp5g24700 28 KPRLKWTCELHHRFIEAVNQLGGPNKATPKGLMKAMEIPGLTLYHLKSHLQKYRL 82
               79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-282682IPR009057Homeodomain-like
SuperFamilySSF466892.51E-152782IPR009057Homeodomain-like
TIGRFAMsTIGR015575.9E-222883IPR006447Myb domain, plants
PfamPF002492.9E-63081IPR001005SANT/Myb domain
PfamPF143791.5E-22131177IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MCLLMESNTN NGNNQKTKMS LLLSTDAKPR LKWTCELHHR FIEAVNQLGG PNKATPKGLM  60
KAMEIPGLTL YHLKSHLQKY RLGKSLKFDD NKLEVSSASE TQEAESKNDS RDFRGSVNEE  120
NNNPANDRGL QITEALQLQM EVQKKLHEQI EVQRHLQVKI EAQGKYLQSV LMKAQQTLAG  180
YTSSTLGMEF ARTELSRLAS MVNPSSSFSE LTQVEEYEET EDAEKGFLCC KKEENRGIRQ  240
LRYSVESSLT SSESSETKLN NNNDERKSME LPLMEIKSEV MTEKKKKRSV LCVEHQPLKK  300
RNIGVDDDDE QHLTLSLNSY KKDMGTCPNI GLGFT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-192784158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-192784158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-192784158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-192784158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-192784158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-192784158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-192784158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-192784158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g24700
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0295160.0BT029516.1 Arabidopsis thaliana At1g69580 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013731542.10.0myb family transcription factor PHL8 isoform X2
SwissprotF4I2741e-167PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLA0A078GTS70.0A0A078GTS7_BRANA; BnaC02g19330D protein
STRINGBo2g064200.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38782759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.21e-165G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]