PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g24930
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family WRKY
Protein Properties Length: 378aa    MW: 42286 Da    PI: 7.7254
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g24930genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY856.9e-27196255259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-.SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkvers.aedpkvveitYegeHnhe 59 
                +Dg++WrKYGqK+ k ++ pr+YYrC+++ +Cpv+k+v+r+ ++d+++  +tYeg+H+h+
  Tp5g24930 196 NDGCQWRKYGQKTAKANPLPRAYYRCSMSsNCPVRKQVQRCgEDDTSAYMTTYEGNHDHP 255
                8***************************99**********934578899**********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-27180257IPR003657WRKY domain
PROSITE profilePS5081124.707190257IPR003657WRKY domain
SuperFamilySSF1182904.45E-24191257IPR003657WRKY domain
SMARTSM007746.6E-33195256IPR003657WRKY domain
PfamPF031064.9E-25196255IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MIKEETDSCV HPFDGVMAES DKEVELDATK AKVDKVREEN KKLKLLLTTT LTDYNSLQMH  60
VSNVIRRQQE ASMEQDRNGH EDFGVDISLR LGRSDPNISK KEDEIVKISV DKEGSDKKRV  120
RIQSCEDQKT DRTMKLDYLS MDVKSKTAEN KCVSSMKDVK TSRNEDHQEV FEGREQPGSK  180
KTRVCVKAPC EDPSINDGCQ WRKYGQKTAK ANPLPRAYYR CSMSSNCPVR KQVQRCGEDD  240
TSAYMTTYEG NHDHPLPMEA THMAAGTSAA ASLLQCGSSS SSSSSSSLSY FFPFHHFSVS  300
TTNSHPTVTL DLTRPNYDPN QSPNYPLSSS SLSFSSSDRP SPSNTRTLSF NGLRSEAPLS  360
TYSQMARLSH QTKLSGQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-181952571474WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g24930
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105649.10.0PREDICTED: probable WRKY transcription factor 36
RefseqXP_013728850.10.0probable WRKY transcription factor 36
SwissprotQ9CAR41e-158WRK36_ARATH; Probable WRKY transcription factor 36
TrEMBLA0A397YXU60.0A0A397YXU6_BRACM; Uncharacterized protein
STRINGBra007884.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139131825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69810.11e-137WRKY DNA-binding protein 36
Publications ? help Back to Top
  1. Yang Y, et al.
    UVR8 interacts with WRKY36 to regulate HY5 transcription and hypocotyl elongation in Arabidopsis.
    Nat Plants, 2018. 4(2): p. 98-107
    [PMID:29379156]