PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g27120
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 393aa    MW: 44620.1 Da    PI: 7.6997
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g27120genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.000612143123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               y C++Cg s s k++ ++Hi++H
  Tp5g27120 21 YLCQYCGISRSKKYLITSHINSH 43
               56********************6 PP
2zf-C2H220.21.6e-066789123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C+ Cg  F+ + +Lk+H+++H
  Tp5g27120 67 HTCQECGAEFKKPAHLKQHMQSH 89
               79*******************99 PP
3zf-C2H216.13.1e-0595119123
                EEET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                + C   dC+ s++rk++L+rH+ tH
  Tp5g27120  95 FACYvsDCTSSYRRKDHLNRHLLTH 119
                668888*****************99 PP
4zf-C2H210.90.0014124149123
                EEET..TTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                +kCp  dC+  Fs + n  rH ++ H
  Tp5g27120 124 FKCPmeDCKSEFSVHGNVSRHVKKfH 149
                89*********************999 PP
5zf-C2H220.31.5e-06196220123
                EEET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                ++C+   Cgk F+  s+L++H+ +H
  Tp5g27120 196 HVCKeiGCGKAFKYASQLQKHQGSH 220
                79*******************9887 PP
6zf-C2H220.31.5e-06286311123
                EEET..TTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                +kC+   C+  Fs  snL++H+++ H
  Tp5g27120 286 FKCEveGCSSKFSKASNLQKHMKVvH 311
                89*********************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355252143IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.0E-46786IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015714.0046794IPR007087Zinc finger, C2H2
SMARTSM003550.00156789IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SuperFamilySSF576672.78E-1080121No hitNo description
Gene3DG3DSA:3.30.160.602.0E-1287121IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.68195124IPR007087Zinc finger, C2H2
SMARTSM003550.3495119IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028097119IPR007087Zinc finger, C2H2
PROSITE profilePS501578.767124154IPR007087Zinc finger, C2H2
SMARTSM003550.3124149IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280126149IPR007087Zinc finger, C2H2
SuperFamilySSF576672.35E-6191222No hitNo description
Gene3DG3DSA:3.30.160.601.0E-7191220IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.803196225IPR007087Zinc finger, C2H2
SMARTSM003550.0028196220IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280198220IPR007087Zinc finger, C2H2
SMARTSM003550.97228253IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.3E-4230251IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280230253IPR007087Zinc finger, C2H2
SMARTSM0035526256277IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.15E-9267323No hitNo description
PROSITE profilePS5015712.944286316IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.2E-9286311IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003552.1E-4286311IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280288311IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-4312337IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003558.1317343IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280319343IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MAGEAANVDV KPSKTKDIRN YLCQYCGISR SKKYLITSHI NSHHKMEVEE ERVDEACEDE  60
EAASGKHTCQ ECGAEFKKPA HLKQHMQSHS LERPFACYVS DCTSSYRRKD HLNRHLLTHK  120
GKLFKCPMED CKSEFSVHGN VSRHVKKFHC NGDGSKDDTG NGDINKDHIN NSDSRKEDLG  180
DGDSRSSDCS TGQKQHVCKE IGCGKAFKYA SQLQKHQGSH VKLDSVEAFC SEPGCMKYFT  240
NEECLKAHIR SCHQHIDCEI CGSQHLKKNI KRHLRTHDED SSPGEFKCEV EGCSSKFSKA  300
SNLQKHMKVV HEDIRPFVCG FPGCGMRFAY KHVRNNHENS GCHMYTCGDF VEADEDFTSR  360
PRGGVKRKQV TAEMLVRKRV MPPQFDSEEH EIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wjq_D6e-18193377275Zinc finger protein 568
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g27120
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301795.10.0transcription factor IIIA
SwissprotQ84MZ40.0TF3A_ARATH; Transcription factor IIIA
TrEMBLR0IDC60.0R0IDC6_9BRAS; Uncharacterized protein
STRINGCagra.4006s0023.1.p0.0(Capsella grandiflora)
STRINGXP_006301795.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47142852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.20.0transcription factor IIIA