PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp5g27440

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

M-type_MADS

Protein Properties

Length: 224aa MW: 25407.9 Da PI: 8.6195

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp5g27440	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	70.5	1.5e-22	50	98	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k i+++ +rqvtfskRrng++KKA ELSvLC+a++ +i fs ++y + Tp5g27440 50 KEIKEENRRQVTFSKRRNGLFKKAAELSVLCGAQIGIITFSRCERIYAF 98 6799**************************************9999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.9E-27	42	101	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.75E-23	42	112	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	25.455	42	102	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.2E-20	44	64	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.0E-22	52	98	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.2E-20	64	79	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.2E-20	79	100	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MEDGEASSTT CFPFTGQKPL KTPNFQVKQQ KETKLQKPKT TKGRQKIEIK EIKEENRRQV 60 TFSKRRNGLF KKAAELSVLC GAQIGIITFS RCERIYAFGN VDTLIEKYLR KTPVMLRSQL 120 GGDVAAGGAD EDGRMWWERA VESVPEEEMD EYMKGLSGLR ENLWTRICEM GGDPTVQMNA 180 QAFPNPMAPV DWKMTDVRNE QGQAGNDGFL DFASVPFLSQ NRRQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp5g27440

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189575	1e-176	AC189575.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011C10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009104862.1	1e-119	PREDICTED: agamous-like MADS-box protein AGL61
Refseq	XP_013651170.1	1e-119	agamous-like MADS-box protein AGL61
TrEMBL	A0A397YVN8	1e-118	A0A397YVN8_BRACM; Uncharacterized protein
STRING	Bra003884.1-P	1e-118	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4697	20	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72350.1	1e-81	M-type_MADS family protein