PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g27710
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB_related
Protein Properties Length: 621aa    MW: 68871.7 Da    PI: 5.3357
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g27710genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.92.6e-09527575348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v ++G g W+ I +       +Rt  ++k++w+++l
        Tp5g27710 527 AWTLSEVTKLVEGVSKYGAGKWSEIKKLSFssySHRTSVDLKDKWRNLL 575
                      7**************************99999*9*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.759520579IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-13522581IPR009057Homeodomain-like
SMARTSM007179.6E-10524577IPR001005SANT/Myb domain
SuperFamilySSF466891.44E-16526585IPR009057Homeodomain-like
CDDcd116603.57E-21526576No hitNo description
PfamPF139214.4E-7528583No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MGTLVGTVED CREMFEGSAQ TRITTFSSTN QIGNPVAYKL VRVAGDGRLV PATDEEILEV  60
NETDMHAASD ACQTVGYLPA DRLPSRLSEL EESSEAIYSG LLQSVNVELY TDQVDSQSEY  120
NEEMLQKVEQ DERLIMIHGS QMSSIPLDTN IQCSSENNMF DEDQIHHEAL LHQPIPFSLN  180
VQNVCDGDQS NTVEPCSNVA SSPKETALPA AAQEPDFSLV RGEICLNNLP IKALQETFRA  240
TFGRETTVKD KTWLKRRITM GLIHSCDVPT TNLTIKDNKL VRNEEKSNDV TDVVSTDMGD  300
DVRATNLKDA PCSTDHVNGQ LNASGHNLSV NHYCATEDFS CEERAAKRVR KPTRRYIEEL  360
SETGEKQQND KSVIPSKDQR LSEKSEVRSI TVSSGKRVTV TRVVSLAGSE IEVPYVSHVR  420
RSRPRENIMA LMECHSSCLE AKASAGESNL LNSEVVNQSS VVKSTSGPVQ KEFGTIHNNN  480
EEHIVTDVDQ DMEPEHIDSS GNSSDDNNNA DAPMMQGGGL RRKHHRAWTL SEVTKLVEGV  540
SKYGAGKWSE IKKLSFSSYS HRTSVDLKDK WRNLLKASFA QSPSNSTGSF KKHGSMHIPK  600
QILLQVRELA EKQSLVPPNH R
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g27710
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0456281e-126AY045628.1 Arabidopsis thaliana At1g72650/F28P22_16 mRNA, complete cds.
GenBankAY0845301e-126AY084530.1 Arabidopsis thaliana clone 110945 mRNA, complete sequence.
GenBankAY1248681e-126AY124868.1 Arabidopsis thaliana At1g72650/F28P22_16 mRNA, complete cds.
GenBankAY5195401e-126AY519540.1 Arabidopsis thaliana MYB transcription factor (At1g72650) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390637.10.0uncharacterized protein LOC18009454
TrEMBLV4KKV40.0V4KKV4_EUTSA; Uncharacterized protein
STRINGXP_006390637.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43642649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.20.0TRF-like 6