PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g28920
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family EIL
Protein Properties Length: 576aa    MW: 65180.6 Da    PI: 5.1295
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g28920genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3437.61.2e-133333961351
                XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWWkekve 100
                e+l++rmwkd+++lkr+ker+k        a  +++ +k+++qa+rkkmsraQDgiLkYMlk mevc+++GfvYgiipekgkpv+g+sd++raWWkekv+
  Tp5g28920  33 EDLERRMWKDRVRLKRIKERQKGGS---LGAQTKETPKKISDQAQRKKMSRAQDGILKYMLKLMEVCKVRGFVYGIIPEKGKPVSGSSDNIRAWWKEKVK 129
                89********************965...3344577889************************************************************** PP

                XXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT--TT--.-----GGG CS
       EIN3 101 fdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelglskdqgtppykkphd 200
                fd+ngpaai+ky+ ++l++++++++    ++++  l++lqD+tlgSLLs+lmqhcdppqr++plekg++pPWWPtG+e+ww +l+l+k q+ ppy+kphd
  Tp5g28920 130 FDKNGPAAIAKYEEECLAFGKSDGN----RNSQFVLQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGTPPPWWPTGNEEWWVKLSLPKGQS-PPYRKPHD 224
                *******************987777....77999*********************************************************.9******* PP

                --HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX..XX......XXXX....XXXXXXXXXXXXXXXXXXX CS
       EIN3 201 lkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah..ss......slrk....qspkvtlsceqkedvegkk 288
                lkk+wkv+vLtavi+hmsp+i++i++++rqsk+lqdkm+akes+++l+vlnqee+++++ s++  +s         +    +++k+++s+e+++dv+g++
  Tp5g28920 225 LKKMWKVGVLTAVISHMSPDIAKIKRHVRQSKCLQDKMTAKESAIWLAVLNQEESLIQQPSSDngTSnltethR--RgnnaDRRKTVISSESDYDVDGTE 322
                ***************************************************************65225777540..34445889999**********999 PP

                XXX.XXXXXXXXXX...............XXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXXXXXXX CS
       EIN3 289 eskikhvqavktta...............gfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetelifadknsisq 351
                e + + ++++++++               + + ++kr+   ++++  s +++  + q+++ ++ e+++i++d+n+++ 
  Tp5g28920 323 EASGSVSSKDNRRNqiqkeqptatsqpvrDQDKAEKRR---RRKRPRSRSGT-VNGQEEEQPEAEQRNILPDMNHVDA 396
                99989999999888999999999966555333333332...33334444443.556777778899********99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048734.7E-12633278No hitNo description
Gene3DG3DSA:1.10.3180.101.1E-70154286IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167684.58E-60159281IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042762Biological Processregulation of sulfur metabolic process
GO:0071281Biological Processcellular response to iron ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MSVADIRMEN EPDDLASDNV PEIDVSDEEI DAEDLERRMW KDRVRLKRIK ERQKGGSLGA  60
QTKETPKKIS DQAQRKKMSR AQDGILKYML KLMEVCKVRG FVYGIIPEKG KPVSGSSDNI  120
RAWWKEKVKF DKNGPAAIAK YEEECLAFGK SDGNRNSQFV LQDLQDATLG SLLSSLMQHC  180
DPPQRKYPLE KGTPPPWWPT GNEEWWVKLS LPKGQSPPYR KPHDLKKMWK VGVLTAVISH  240
MSPDIAKIKR HVRQSKCLQD KMTAKESAIW LAVLNQEESL IQQPSSDNGT SNLTETHRRG  300
NNADRRKTVI SSESDYDVDG TEEASGSVSS KDNRRNQIQK EQPTATSQPV RDQDKAEKRR  360
RRKRPRSRSG TVNGQEEEQP EAEQRNILPD MNHVDAPLLE YNINGTHHEE GILEPSIALG  420
PEETGLELVI PEFDHNYTYL PPVNGQAMMP LDERPMLYGP NPNQELQFGS GYNFYNPSAV  480
FVHNQEEDIA PTQIELNTQA QPHNNSFEAP GVLQPHGNED GMAGRDLPPQ FQSDQDKLLD  540
SNILSPFNDL AFDSSTFYSG FDSYGAFDDD YSWFGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wij_A8e-841582899140ETHYLENE-INSENSITIVE3-like 3 protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1356364EKRRRRKRP
2357362KRRRRK
3357363KRRRRKR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00233DAPTransfer from AT1G73730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g28920
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532450.0AK353245.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-23-B16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390517.10.0ETHYLENE INSENSITIVE 3-like 3 protein
SwissprotO231160.0EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBLE4MXJ80.0E4MXJ8_EUTHA; mRNA, clone: RTFL01-23-B16
TrEMBLV4KKK70.0V4KKK7_EUTSA; Uncharacterized protein
STRINGXP_006390517.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46582548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73730.10.0ETHYLENE-INSENSITIVE3-like 3
Publications ? help Back to Top
  1. Frerigmann H,Gigolashvili T
    Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency.
    Front Plant Sci, 2014. 5: p. 626
    [PMID:25426131]
  2. Zheng ZL,Zhang B,Leustek T
    Transceptors at the boundary of nutrient transporters and receptors: a new role for Arabidopsis SULTR1;2 in sulfur sensing.
    Front Plant Sci, 2014. 5: p. 710
    [PMID:25566284]
  3. Panda SK,Sunkar R
    Nutrient- and other stress-responsive microRNAs in plants: Role for thiol-based redox signaling.
    Plant Signal Behav, 2015. 10(4): p. e1010916
    [PMID:25912823]
  4. Wawrzyńska A,Sirko A
    EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor.
    Plant Sci., 2016. 253: p. 50-57
    [PMID:27968996]