PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g29590
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB_related
Protein Properties Length: 59aa    MW: 6893.87 Da    PI: 7.2544
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g29590genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.24.4e-091443130
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIart 30
                     +g WT+eEd  lv +++++G g+W++ +++
        Tp5g29590 14 KGEWTAEEDRMLVAYINEYGLGDWRALPKR 43
                     799**********************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.549953IPR017877Myb-like domain
SuperFamilySSF466892.55E-91152IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-101244IPR009057Homeodomain-like
PfamPF002493.5E-71444IPR001005SANT/Myb domain
CDDcd001672.97E-61643No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 59 aa     Download sequence    Send to blast
MGRTTWFDVD GMKKGEWTAE EDRMLVAYIN EYGLGDWRAL PKRAVFSNFS RSCTIFHCV
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g29590
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895741e-41AC189574.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011B08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390428.16e-25transcription factor MYB106
RefseqXP_018444199.17e-25PREDICTED: myb-related protein 308-like
TrEMBLV4K9J51e-23V4K9J5_EUTSA; Uncharacterized protein
STRINGXP_006390428.12e-24(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18710.12e-24myb domain protein 47