PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g32010
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family Trihelix
Protein Properties Length: 585aa    MW: 67085.7 Da    PI: 7.295
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g32010genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.91.5e-2942126187
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                rW++ e+laL+++r+em++++r++ lk+plWee+s+km+e g++r++k+Ckek+en+ k++k++keg+ ++  ++ +t+++f++lea
  Tp5g32010  42 RWPRPETLALLRIRSEMDKAFRDSTLKAPLWEEISRKMMELGYKRKAKKCKEKFENVYKYHKRTKEGRTGK--PEGKTYRFFEELEA 126
                8********************************************************************95..55568******985 PP
2trihelix108.83.6e-34407492187
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                rW+k ev aLi++r+++e +++++  k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr + +s+tcpyf+qlea
  Tp5g32010 407 RWPKTEVEALIRIRKNLEANYQENGTKGPLWEEISAGMRRLGYNRSAKRCKEKWENINKYFKKVKESNKKR-PLDSKTCPYFHQLEA 492
                8*********************************************************************8.9************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.6139101IPR001005SANT/Myb domain
PROSITE profilePS500906.694199IPR017877Myb-like domain
CDDcd122034.47E-1641106No hitNo description
PfamPF138375.0E-2041126No hitNo description
PROSITE profilePS500907.526400464IPR017877Myb-like domain
SMARTSM007179.2E-4404466IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-4406463IPR009057Homeodomain-like
CDDcd122032.25E-26406471No hitNo description
PfamPF138377.3E-24406493No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MSGNSSGLLD SSGGGGVGGS GEEEKDMKME ETGEVGGGGG NRWPRPETLA LLRIRSEMDK  60
AFRDSTLKAP LWEEISRKMM ELGYKRKAKK CKEKFENVYK YHKRTKEGRT GKPEGKTYRF  120
FEELEAFETL NSYPPEPESQ PAKSPAATMT TTASATTSLI PWISSNNPST EKNSLPSKHH  180
HHHHQFSVKP IATSPTFLAK QPSSTTPFPF YSNNHTTTVD TGFKPTSNDL INNVSSLNLF  240
SSSTSSSTAS DEEEDHHQEK RSRKKRKYWK GLFTKLTKEL MEKQEKMQKR FLETLENRER  300
ERISREEAWR VQEVARINRE HEILVHERSN AADKDTAIIS FLQKISGGQQ QPRQQPQQNH  360
KVAQRKQYQS EHSITFESKE PRPVLLDTTM KMGNYDGNHS VSPSSSRWPK TEVEALIRIR  420
KNLEANYQEN GTKGPLWEEI SAGMRRLGYN RSAKRCKEKW ENINKYFKKV KESNKKRPLD  480
SKTCPYFHQL EALYNERNKS GALPILPLMV TPQKQLLLPQ ETQTEFETDQ QDKVVNKEVE  540
EEGESEEDDY EDDEEEGEGD NETSEFEIVL NKTSSPMDIN NNLFT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18492KRKAKKCKE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g32010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0871170.0AY087117.1 Arabidopsis thaliana clone 3190 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_177815.10.0Duplicated homeodomain-like superfamily protein
SwissprotQ391170.0TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A087HJ000.0A0A087HJ00_ARAAL; Uncharacterized protein
STRINGA0A087HJ000.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59952847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.20.0Trihelix family protein