PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g32370
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 244aa    MW: 26854.4 Da    PI: 4.6722
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g32370genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.6e-194090155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               +gy+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++aa++ ++g
  Tp5g32370 40 PGYRGVRMRT-WGKWVSEIREPRK---KSRIWLGTFSTAEMAARAHDAAALTIKG 90
               79*****998.**********843...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.87E-2340100No hitNo description
PfamPF008476.1E-134090IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-224199IPR016177DNA-binding domain
PROSITE profilePS5103223.2884198IPR001471AP2/ERF domain
SMARTSM003801.5E-3641104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-324299IPR001471AP2/ERF domain
PRINTSPR003678.3E-114253IPR001471AP2/ERF domain
PRINTSPR003678.3E-116480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MTESSISSVK LSSPVEEENH LHHDQDSHRT NNKKRIRPDP GYRGVRMRTW GKWVSEIREP  60
RKKSRIWLGT FSTAEMAARA HDAAALTIKG TSAVLNFPEL ATYLPRPASS SPRDVQAAAA  120
VAAAMDFSSS SSAVEISDPT TVVPETHLSS SSSYSTSTSS SSLSPSSEEA ASSTAEELSE  180
IVELPNLETS YDEPWSEFVY VDPAYPPSSP WYFNNCYSFY YHSDENGTSM ADPFESSNFC  240
PLFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1842981572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00245DAPTransfer from AT1G77200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g32370
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0042600.0AC004260.1 Arabidopsis thaliana chromosome I BAC T14N5 genomic sequence, complete sequence.
GenBankAY5608750.0AY560875.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g77200) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010471905.11e-124PREDICTED: ethylene-responsive transcription factor ERF037
SwissprotO806541e-109ERF37_ARATH; Ethylene-responsive transcription factor ERF037
TrEMBLA0A3N6RK581e-121A0A3N6RK58_BRACR; Uncharacterized protein
STRINGXP_010471905.11e-123(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77200.13e-87ERF family protein