PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp5g34660

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

Protein Properties

Length: 257aa MW: 29736.8 Da PI: 10.0508

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp5g34660	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	54.3	2.4e-17	124	213	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 f+k +++s+v++ +l lp++f+ +h+ ++++ ++tl de+ +++ k+ +k++ l++GW++F+ +++L +gD +vF l++ ++f +v ++r Tp5g34660 124 FVKPMLQSHVTRGFWLGLPRQFCVTHM--PHRDEMITLVDENDEEFVTKYLADKNG----LSAGWRGFAIDHQLVDGDAIVFDLINPTTF--KVYIIR 213 89**********************7..457779***********777777....**********************986766..787776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.8E-20	115	213	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.94E-24	117	213	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.85E-25	122	213	No hit	No description
PROSITE profile	PS50863	11.646	124	215	IPR003340	B3 DNA binding domain
SMART	SM01019	6.8E-21	124	215	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.3E-15	124	213	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MVESELSYEQ IRLNRLEENK KRMLELNLNK LSQSLRLSSS KPSPAKPKTL RIPVDLSEVR 60 RSSRAKNPPP SYREIGLEPL ERPRRSYQKR DLLNRVYASE DARVYAIRRA ETLQSSLEPE 120 FPSFVKPMLQ SHVTRGFWLG LPRQFCVTHM PHRDEMITLV DENDEEFVTK YLADKNGLSA 180 GWRGFAIDHQ LVDGDAIVFD LINPTTFKVY IIRVYDESNK DSGRNAYKEL GNQEETVSDA 240 RKLPSSNKRK RKAGSRV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp5g34660

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006389869.1	1e-139	B3 domain-containing protein At3g19184
Swissprot	Q1G3M3	1e-119	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	V4JPP5	1e-138	V4JPP5_EUTSA; Uncharacterized protein
STRING	XP_006389869.1	1e-139	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3744	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-103	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]