PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g34760
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family AP2
Protein Properties Length: 321aa    MW: 36255.8 Da    PI: 6.973
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g34760genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.61.3e-1248104155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV++++++gr++A+++d  s+n  ++k+ + g ++ +e Aa+a++ a++k++g
  Tp5g34760  48 SSYRGVTRHRWTGRYEAHLWDkNSWNEtQTKKGRQGAYDEEEAAARAYDLAALKYWG 104
                67*******************88889998888888********************98 PP
2AP253.94.4e-17145196155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  Tp5g34760 145 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAARAYDIAAIEYRG 196
                89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.4E-948104IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-1548113IPR016177DNA-binding domain
SMARTSM003801.0E-2049118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-1349113IPR001471AP2/ERF domain
PROSITE profilePS5103219.17749112IPR001471AP2/ERF domain
PRINTSPR003673.6E-65061IPR001471AP2/ERF domain
PfamPF008471.6E-12145196IPR001471AP2/ERF domain
CDDcd000181.16E-24145206No hitNo description
SuperFamilySSF541715.1E-18145206IPR016177DNA-binding domain
PROSITE profilePS5103218.874146204IPR001471AP2/ERF domain
SMARTSM003802.8E-26146210IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-18146205IPR001471AP2/ERF domain
PRINTSPR003673.6E-6186206IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:1904278Biological Processpositive regulation of wax biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MAKVSQRSKK VIEDEIIEKT ATASASVVFK SKRKRKSPPQ NAPPQRSSSY RGVTRHRWTG  60
RYEAHLWDKN SWNETQTKKG RQGAYDEEEA AARAYDLAAL KYWGRDTLLN FPLLAYEEDV  120
KEMEGHSKEE YIGSLRSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK YLYLGTYATQ  180
EEAARAYDIA AIEYRGLNAV TNFDVSRYLN LPASEKPNAA ANHPPEESDS DSKPIRNPNH  240
GPGSPGDQTS SDDNEFRKTE ETIEPSTPPE AIPYRRSFPD DIQTYFGCQD SGKLAAEEDV  300
IFGGFSSFIN PGFYNEFDYG P
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g34760
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527860.0AK352786.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-07-M17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024010035.10.0AP2-like ethylene-responsive transcription factor At1g79700 isoform X1
SwissprotA0JPZ81e-150AP2L3_ARATH; AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLA0A1J3CZN20.0A0A1J3CZN2_NOCCA; AP2-like ethylene-responsive transcription factor
STRINGBo6g124080.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.21e-139AP2 family protein