PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g35180
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family WRKY
Protein Properties Length: 260aa    MW: 29877 Da    PI: 5.986
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g35180genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY67.61.9e-21104164259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                +Dg++WrKYGqK++k s + r YYrC++a   +C++ k+v++ ++ p++  +tY g+H ++
  Tp5g35180 104 NDGFSWRKYGQKKIKTSSHQRCYYRCAYAkdrNCNAAKRVQQIQDSPSLYRTTYVGKHICD 164
                8***************************99999*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081119.46298166IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.7E-2399165IPR003657WRKY domain
SuperFamilySSF1182905.62E-22100165IPR003657WRKY domain
SMARTSM007749.5E-31103165IPR003657WRKY domain
PfamPF031063.1E-22104163IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MFHGVDKAVE ALLRGQESAN RLKTVLEHHR TSPVPTEPLF DTVLDSFSLA LSLFTNSTSS  60
NSRPHRASSQ NAASFVARKS RKKTSYEDNG SEHYTYDSPS PLHNDGFSWR KYGQKKIKTS  120
SHQRCYYRCA YAKDRNCNAA KRVQQIQDSP SLYRTTYVGK HICDVNAFSQ PHDDITNGST  180
MIRFDKLDQD MSESVMPQFV PVEHQEITIE DECKDQITNQ EFDYKDFLVD DEQFCAYQFP  240
PGNSMFVDDI SVFDYNPFDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-15104163968OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g35180
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405092.11e-144probable WRKY transcription factor 64
SwissprotQ9C5574e-84WRK64_ARATH; Probable WRKY transcription factor 64
TrEMBLV4L8491e-143V4L849_EUTSA; Uncharacterized protein
STRINGXP_006405092.11e-143(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56091847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66560.16e-80WRKY DNA-binding protein 64