PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g00270
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family LBD
Protein Properties Length: 226aa    MW: 24588.9 Da    PI: 6.2358
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g00270genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.25.6e-38111111100
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                +C aCk+lrrkC+++C +apyf +e+ +++fa+vhk+FGasn +kll  +p ++r da+ +l yeA ar+rdPvyG+vg+i++lq+q+++l+aela +++
  Tp6g00270  11 PCGACKFLRRKCVAECLFAPYFDSEEgTAHFAAVHKVFGASNTSKLLLMIPASRRLDAVVTLSYEALARLRDPVYGCVGHIFALQHQVMNLQAELAIVQT 110
                7*********************998879********************************************************************9998 PP

     DUF260 100 e 100
                +
  Tp6g00270 111 H 111
                6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.27210112IPR004883Lateral organ boundaries, LOB
PfamPF031953.6E-3711109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MTGSTTAGGS PCGACKFLRR KCVAECLFAP YFDSEEGTAH FAAVHKVFGA SNTSKLLLMI  60
PASRRLDAVV TLSYEALARL RDPVYGCVGH IFALQHQVMN LQAELAIVQT HLSALQRLPP  120
PPPKLQNNSK TEAASSAKAP LIASVDNNNN NNNNKDVSSS LLHIIGMPQE QQQPQEDIEV  180
PTESVDFRTL LGLEDPLDED GDLNTLAREF VSKYLTQGKY RPSSPI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-3741124111LOB family transfactor Ramosa2.1
5ly0_B4e-3741124111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g00270
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018465751.11e-126PREDICTED: LOB domain-containing protein 31 isoform X2
SwissprotO813221e-114LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A078JPX11e-122A0A078JPX1_BRANA; BnaUnng02520D protein
TrEMBLA0A291LR221e-122A0A291LR22_BRARR; Transcription factor LBD31
TrEMBLA0A3P5XT751e-122A0A3P5XT75_BRACM; Uncharacterized protein
TrEMBLM4F8B01e-122M4F8B0_BRARP; Uncharacterized protein
STRINGBra037322.1-P1e-123(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.11e-97LOB domain-containing protein 31