PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g01190
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family Dof
Protein Properties Length: 560aa    MW: 62310.7 Da    PI: 7.8503
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g01190genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof117.26.6e-37328386260
     zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 
                +++ ++cprC+s+ntkfCyynnysl+qPry+Ck+CrryWt+GG+lrnvPvGgg+rk+kk
  Tp6g01190 328 PQEPRNCPRCNSSNTKFCYYNNYSLAQPRYLCKSCRRYWTEGGSLRNVPVGGGSRKSKK 386
                67899***************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF050974.9E-61187IPR007789Protein of unknown function DUF688
ProDomPD0074782.0E-27327382IPR003851Zinc finger, Dof-type
PfamPF027012.2E-32330386IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.36332386IPR003851Zinc finger, Dof-type
PROSITE patternPS013610334370IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MEAEKEREQE GNLTAMKLPV LPIKPNSHSH SMSSPIHSSI AASVPFSWEE EPGKPKQHSS  60
SSSSSTSSPS TSSSPETHKS LELPPRLHSL EKDGGSVTKL QSPITVFDGP YSMTRSRRLD  120
SPSFRMMVKG GGDCYGSFRS DIYGDLEDVD EETKEHNMSS GSLALVKKRG RLGFLGFRRR  180
RALKGKTEFG RGSYVFPSSV DRESECGRKE EEEGEDKSFG YSDGISCSQS SRFCEVKVTN  240
ITRTGSFSNT LPAPTPSSKS HFWVTHIMDH HHYSQHDHDQ YQHQMAMTNN NPYNTIITTP  300
PPPTTTVDST AVIMDDQKKM MTTMNTRPQE PRNCPRCNSS NTKFCYYNNY SLAQPRYLCK  360
SCRRYWTEGG SLRNVPVGGG SRKSKKLPLL LPNSSYSSSS PTSTKNLPDL NPPFAFTSST  420
TSSNPSKTHQ NNNDLSLSFS NPTMQEKRAQ GYYGHFTEQA TTGGQNCLFA SPMGMIQFRQ  480
DYDPEHNKTD LGFSLDRNKE EIGNHDNGGG SKLLFPYGGH DEHHHHHERH DDGNKKRESS  540
SSNELWSGII LGGDSGGPTW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166180KKRGRLGFLGFRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g01190
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3534230.0AK353423.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-36-J10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD7M5060.0D7M506_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_60029010.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM146951720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00940.11e-112Dof family protein