PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g01440
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family B3
Protein Properties Length: 340aa    MW: 38799.9 Da    PI: 8.2071
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g01440genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3962.5e-3034119184
                EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                f+kvltpsdv+k++rlv+pk++ae++   + + ++++ l+++d++g+ W+++++y+++s++yv+tkGW++Fvk+++L+ gD+v F++
  Tp6g01440  34 FDKVLTPSDVGKLNRLVIPKQHAENYfplDDN-QNGTVLVFQDRNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDNGDTVSFHR 119
                89*********************999*97444.46789***********************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.8E-3930143IPR015300DNA-binding pseudobarrel domain
CDDcd100174.28E-2732119No hitNo description
SuperFamilySSF1019365.23E-3032119IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.43834140IPR003340B3 DNA binding domain
PfamPF023623.1E-2734119IPR003340B3 DNA binding domain
SMARTSM010193.6E-2334134IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MSTTTNFNQE PTENGASGSD NNNYFNSVMR EHMFDKVLTP SDVGKLNRLV IPKQHAENYF  60
PLDDNQNGTV LVFQDRNGKM WRFRYSYWNS SQSYVMTKGW SRFVKEKKLD NGDTVSFHRG  120
YVPDDNEPEN RRKILFIDWR HRTDINQLVH NINHHHCPIF GSPAYPTASY YPVSGYSMPH  180
YRRFPPCYQE TDFLGYGYDR VVNGGSYYHA GSPLDHHRQW NLGRSQPLVY DSYPVLFPTT  240
RVTSPSSAML PPSPPSQPPQ EGSTTKKLRL FGVDVEESSS SGETRGEMGV AGYSSSSPVV  300
IRDNESSWRS PRGEMGASSS SVMQLSHGEE YKRKGKSLEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-48301424113B3 domain-containing transcription factor NGA1
5os9_B1e-48301424113B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA3. {ECO:0000269|PubMed:16603651}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00424DAPTransfer from AT4G01500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g01440
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013719435.11e-174B3 domain-containing transcription factor NGA4-like
RefseqXP_013719444.11e-174B3 domain-containing transcription factor NGA4-like
SwissprotO825951e-167NGA4_ARATH; B3 domain-containing transcription factor NGA4
TrEMBLA0A3P6AVI81e-173A0A3P6AVI8_BRACM; Uncharacterized protein
STRINGBostr.7365s0004.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136511527
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.11e-153B3 family protein
Publications ? help Back to Top
  1. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  2. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]