PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp6g03290

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

HB-other

Protein Properties

Length: 506aa MW: 56614 Da PI: 9.2964

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp6g03290	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56	6.6e-18	21	76	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR t+ q+ +Le+++++++yp++++++++A++++Lte+qV+ WF+ rR k+k+ Tp6g03290 21 KKRKLKTPIQVMALENFYNEHKYPTEDMKAKIAEEIELTEKQVSGWFCHRRLKDKR 76 8999**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.0E-19	7	76	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.17E-16	16	79	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.163	17	77	IPR001356	Homeobox domain
SMART	SM00389	5.4E-18	19	81	IPR001356	Homeobox domain
CDD	cd00086	1.68E-16	21	77	No hit	No description
Pfam	PF00046	2.6E-15	21	76	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence Send to blast
MLSDSGEVPA DGDKTSAENS KKRKLKTPIQ VMALENFYNE HKYPTEDMKA KIAEEIELTE 60 KQVSGWFCHR RLKDKRSVKE DGNTIGSQDR SSVVLQDRCS GLRQDSCGST KQADYLNPKP 120 REVESQRLYG GSYMGNADGE DSTSSERSSS LHKNLVSSKD GIRDVENSRY VAHNEVIQHP 180 QVMRSCGYNK PSGYLKVKGE TENVAITAVK RQLGRQYRED GPPLGVEFDP LPPGAFEPQT 240 NVIVQEPIYV GNQRRSHPPY STGARKSFIP GPSYELARKS KMHSPDPYSD DDDDDDIMVG 300 MEPGLRYKQS LQEPRLKSPC LSYSNPSPDH NSLKRTFKSP PLEIPLTNSK KSRISSKSRA 360 EGSRNNMIAN FHKLSGNNVE TNQTHDYDKN IFNGGRKTGY LTKSSKLLFP SSSRSPDSME 420 RGPSSGMVGK YRGEMNQMKM HREKLHSAGE PLVTKRLKHG YPQQVHAPKS SNSEFFGRKG 480 QINRSGVELP FSFSGDETEE SSSSMD

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence Send to blast

MLSDSGEVPA DGDKTSAENS KKRKLKTPIQ VMALENFYNE HKYPTEDMKA KIAEEIELTE  60
KQVSGWFCHR RLKDKRSVKE DGNTIGSQDR SSVVLQDRCS GLRQDSCGST KQADYLNPKP  120
REVESQRLYG GSYMGNADGE DSTSSERSSS LHKNLVSSKD GIRDVENSRY VAHNEVIQHP  180
QVMRSCGYNK PSGYLKVKGE TENVAITAVK RQLGRQYRED GPPLGVEFDP LPPGAFEPQT  240
NVIVQEPIYV GNQRRSHPPY STGARKSFIP GPSYELARKS KMHSPDPYSD DDDDDDIMVG  300
MEPGLRYKQS LQEPRLKSPC LSYSNPSPDH NSLKRTFKSP PLEIPLTNSK KSRISSKSRA  360
EGSRNNMIAN FHKLSGNNVE TNQTHDYDKN IFNGGRKTGY LTKSSKLLFP SSSRSPDSME  420
RGPSSGMVGK YRGEMNQMKM HREKLHSAGE PLVTKRLKHG YPQQVHAPKS SNSEFFGRKG  480
QINRSGVELP FSFSGDETEE SSSSMD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp6g03290

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006396554.1	0.0	uncharacterized protein LOC18014314
TrEMBL	A0A1J3D4B5	0.0	A0A1J3D4B5_NOCCA; Homeobox protein BarH-like 1
TrEMBL	A0A1J3K3P8	0.0	A0A1J3K3P8_NOCCA; Homeobox protein BarH-like 1
STRING	Bostr.2983s0116.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12202	25	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	0.0	HB-other family protein