PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g04340
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family G2-like
Protein Properties Length: 179aa    MW: 21260.1 Da    PI: 10.9289
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g04340genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like84.51.1e-26458155
    G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
               k+r +W+p+LH+rFv+aveqLGG+ +A P +il++m+   +t +h+kSHLQ YR 
  Tp6g04340  4 KQRQKWSPDLHRRFVHAVEQLGGERRASPNKILKFMDGREVTQSHIKSHLQNYRN 58
               79****************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.188161IPR017930Myb domain
SuperFamilySSF466893.59E-14260IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-23359IPR009057Homeodomain-like
TIGRFAMsTIGR015574.1E-22460IPR006447Myb domain, plants
PfamPF002491.7E-9657IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MPKKQRQKWS PDLHRRFVHA VEQLGGERRA SPNKILKFMD GREVTQSHIK SHLQNYRNKK  60
QMQFVQENRV RQEMRWRQYQ QYLQTYERIR AATWFIPNQR RLQWNINETR TTFLKSRNKN  120
MEVSWKSLFQ SSRAGLNEVG DKNIVVHADD DVAVAGDGAN DSSKGKEKLS LELTLGLKY
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g04340
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024009953.14e-58putative Myb family transcription factor At1g14600
TrEMBLM4EL368e-48M4EL36_BRARP; Uncharacterized protein
STRINGBostr.7199s0005.1.p1e-52(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04580.11e-35G2-like family protein