PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp6g04880

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

M-type_MADS

Protein Properties

Length: 298aa MW: 33802.2 Da PI: 8.8033

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp6g04880	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	50.7	2.4e-16	10	50	2	42
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +i n+s r+ tf kR++g++KK +ELS+LC++ ++ ii+++ Tp6g04880 10 FIPNDSSRKATFKKRKKGLIKKVNELSTLCGITACAIIYGP 50 799************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.9E-22	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	16.61	1	49	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	8.11E-24	1	85	IPR002100	Transcription factor, MADS-box
CDD	cd00266	2.97E-23	2	85	No hit	No description
PRINTS	PR00404	2.7E-8	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.6E-16	10	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.7E-8	23	38	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MTRKKVKLAF IPNDSSRKAT FKKRKKGLIK KVNELSTLCG ITACAIIYGP YDSNPEVWPS 60 NLGVQRIVSE FRTLPEMDQH KKMVDQETFL RQRIAKASEH LKRQRKDNRE TEMTEVMFQC 120 LVGNLGMFHL NIMNLNDLGY VIDQYLKDVN RRIEILGNSG LELGESSNAA VAATTSEGIG 180 SLAIVAATTA PAATIQLHHH QQEQFRHHVA PHVGLYGQPL NLNLNHNQNQ HQWLMEMSYA 240 AEQMGFPFMD DNHHHHHHQQ QQQLPGDSST APATVSSSST WFRQGFESER SHSDKTKL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2	24	RKKVKLAFIPNDSSRKATFKKRK
2	21	25	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269\|PubMed:16798889, ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp6g04880

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018454705.1	1e-136	PREDICTED: agamous-like MADS-box protein AGL80
Swissprot	Q9FJK3	1e-110	AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBL	M4DPP9	1e-130	M4DPP9_BRARP; Uncharacterized protein
STRING	Bra018490.1-P	1e-131	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM70	28	415

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	1e-107	AGAMOUS-like 80

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]