PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g06330
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family M-type_MADS
Protein Properties Length: 199aa    MW: 22171.4 Da    PI: 9.5697
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g06330genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.41.2e-101653340
               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
               i  k    +tf+kR +g++ KA+ L+ L +a++av++ 
  Tp6g06330 16 ITKKESLATTFTKRSTGLFSKASQLCLLSGAQIAVLVT 53
               66667778***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-12669IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.4652IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.23E-14880IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-5828IPR002100Transcription factor, MADS-box
PfamPF003191.7E-111556IPR002100Transcription factor, MADS-box
CDDcd002661.26E-162186No hitNo description
PRINTSPR004046.1E-52843IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MVKRGGTKRK IKIEKITKKE SLATTFTKRS TGLFSKASQL CLLSGAQIAV LVTPVSLHSN  60
VSFYTFGHSS VDAVVSAFLN GQRPVPVPEE TRKEKEDIGI FMARKDLGLE LWWEDEGLVK  120
LTNPEDLTDT IKSMSTILTS LKEFRSIGNN SQRDHQHHHE AFVNSETKKS NVVLHHGTQE  180
PADQTLINLQ SIVASLMMI
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g06330
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481945.16e-69PREDICTED: agamous-like MADS-box protein AGL97
TrEMBLA0A0D3DC521e-64A0A0D3DC52_BRAOL; Uncharacterized protein
STRINGBo7g092540.12e-65(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38620.15e-45M-type_MADS family protein