PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g10570
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 139aa    MW: 15952.2 Da    PI: 10.5402
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g10570genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91e-172372255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               +ykG+r +k +g+WvAeIr+p   +kr r++lg++ ta  Aa+a++ a+ +l+g
  Tp6g10570 23 RYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYKTAVAAARAYDTAAFYLRG 72
               7******99.**********9...336*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-112372IPR001471AP2/ERF domain
SMARTSM003801.2E-362386IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-302381IPR001471AP2/ERF domain
CDDcd000181.10E-182382No hitNo description
PROSITE profilePS5103222.3792380IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-212381IPR016177DNA-binding domain
PRINTSPR003677.1E-122435IPR001471AP2/ERF domain
PRINTSPR003677.1E-126282IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MEETGQVMNE KRKWSHISPK ERRYKGIRMR KWGKWVAEIR EPNKRSRIWL GSYKTAVAAA  60
RAYDTAAFYL RGPLARLNFP EQILRDRNNV AGAVGDMSAT FIRQKAAEVG SRVDEELRSE  120
NSISVEKPDM NKLPEAGEV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-162083266ATERF1
3gcc_A1e-162083266ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00430DAPTransfer from AT4G06746Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g10570
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010438722.13e-69PREDICTED: ethylene-responsive transcription factor RAP2-9
SwissprotQ8W3M33e-62RAP29_ARATH; Ethylene-responsive transcription factor RAP2-9
TrEMBLV4N1767e-66V4N176_EUTSA; Uncharacterized protein
STRINGXP_010438722.11e-68(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06746.17e-55related to AP2 9
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]