PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g12670
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family NF-YC
Protein Properties Length: 209aa    MW: 23123.9 Da    PI: 5.0059
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g12670genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC171.59.1e-54451441100
      NF-YC   1 qlksfwekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprde 100
                qlk+ w +q+e ++dfk h+lPlarikki+k+d dv+misaeaP++++kace+fi++lt+rsw+h+eenkrrtl++sdi++av+rt+ fdfl+divprde
  Tp6g12670  45 QLKNLWYQQMEAVEDFKTHQLPLARIKKIMKSDRDVRMISAEAPIVFAKACEMFIVDLTMRSWIHTEENKRRTLQRSDISTAVARTFAFDFLLDIVPRDE 144
                89************************************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.15E-3152160IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.7E-3556127IPR009072Histone-fold
PfamPF008084.6E-2164127IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MENNDNTVGS HSQPTATATA TTTAIYSQPP QTASFNPFSQ QENQQLKNLW YQQMEAVEDF  60
KTHQLPLARI KKIMKSDRDV RMISAEAPIV FAKACEMFIV DLTMRSWIHT EENKRRTLQR  120
SDISTAVART FAFDFLLDIV PRDEFPPDPT YMAVRHPDGG VPYYYPPVIG GTGMYAPLPV  180
PSWPSPWPAV SGGDGEGEAG QSGGNNGGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B7e-4651142495NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114120RRTLQRS
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g12670
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006402087.12e-98nuclear transcription factor Y subunit C-6
SwissprotQ9FGP75e-66NFYC6_ARATH; Nuclear transcription factor Y subunit C-6
TrEMBLV4KZY05e-97V4KZY0_EUTSA; Uncharacterized protein
STRINGXP_006402087.19e-98(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47828160
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50480.13e-58nuclear factor Y, subunit C6
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]