PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp6g12940

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

NAC

Protein Properties

Length: 191aa MW: 22631.2 Da PI: 4.6841

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp6g12940	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	102.3	6.5e-32	17	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk....k 96 lppGfrF+P de+lv eyL+kkv ++++++ ++e++ ++v+PwdL +++ke+y+F+k+++++ rk r t sgyW++ + +ev+++ Tp6g12940 17 LPPGFRFDPDDEDLVFEYLAKKVLHRPMDF--DLPELRSCNVDPWDLL---GEKNKEVYYFVKKEERE----RKGRETLSGYWEECEE-EEVMESgdrsC 106 79***********************999..49*********6...56789***99875....899*****8866.66777646555 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++l g +kt++fy g++p+g+ t W+m e+rl Tp6g12940 107 NHLEGRRKTFAFYIGKKPRGTITPWIMYEFRL 138 666*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.14E-34	6	163	IPR003441	NAC domain
PROSITE profile	PS51005	33.802	17	164	IPR003441	NAC domain
Pfam	PF02365	7.2E-19	18	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MDISTQRFAM NGRSMRLPPG FRFDPDDEDL VFEYLAKKVL HRPMDFDLPE LRSCNVDPWD 60 LLGEKNKEVY YFVKKEERER KGRETLSGYW EECEEEEVME SGDRSCNHLE GRRKTFAFYI 120 GKKPRGTITP WIMYEFRLLS SRATRWSSSR GEVGKWRAVK VVVKEENEEE IEEDDQHASD 180 ESDGEEVVQS R

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-19	15	139	15	143	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-19	15	139	15	143	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-19	15	139	15	143	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-19	15	139	15	143	NO APICAL MERISTEM PROTEIN
3swm_A	6e-19	15	139	18	146	NAC domain-containing protein 19
3swm_B	6e-19	15	139	18	146	NAC domain-containing protein 19
3swm_C	6e-19	15	139	18	146	NAC domain-containing protein 19
3swm_D	6e-19	15	139	18	146	NAC domain-containing protein 19
3swp_A	6e-19	15	139	18	146	NAC domain-containing protein 19
3swp_B	6e-19	15	139	18	146	NAC domain-containing protein 19
3swp_C	6e-19	15	139	18	146	NAC domain-containing protein 19
3swp_D	6e-19	15	139	18	146	NAC domain-containing protein 19
4dul_A	5e-19	15	139	15	143	NAC domain-containing protein 19
4dul_B	5e-19	15	139	15	143	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp6g12940

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT015150	0.0	BT015150.1 Arabidopsis thaliana At5g50820 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_199895.3	1e-117	NAC domain containing protein 97
TrEMBL	A0A178UQH2	1e-115	A0A178UQH2_ARATH; NAC097
TrEMBL	Q9FGQ1	1e-115	Q9FGQ1_ARATH; NAC domain containing protein 97
STRING	AT5G50820.1	1e-116	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14666	18	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50820.1	1e-101	NAC domain containing protein 97