PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp6g13570

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

M-type_MADS

Protein Properties

Length: 234aa MW: 27617.4 Da PI: 7.4553

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp6g13570	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	30.1	6.4e-10	15	53	2	40
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 +ie++ r+ tf kR +lKK +EL LC+++ ++i+f Tp6g13570 15 FIEDDKARKSTFKKRTSPVLKKCNELMKLCNVKSCMIVF 53 8************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	13.442	6	53	IPR002100	Transcription factor, MADS-box
SMART	SM00432	6.6E-7	6	67	IPR002100	Transcription factor, MADS-box
CDD	cd00266	4.85E-15	7	82	No hit	No description
SuperFamily	SSF55455	2.88E-12	8	83	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.9E-12	15	54	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MTMRIKMKKK VKLAFIEDDK ARKSTFKKRT SPVLKKCNEL MKLCNVKSCM IVFPKPPNEG 60 VQELSSKFKE VSLGNQKKKM VNQSIITKPD EQDEQDGVCE ETLREKGESS LSVPPRPDVT 120 PSWYDNHMKQ SQNLYEYHAQ IPQKLHEFNM MQSSNQNQKQ KEPFQFNCQT LYDFYDGIPQ 180 QLEAFNKKYN LRPYEYFESI DPNWKMDPSL NENQDFMDTP KEHMDTPKEH IDDA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp6g13570

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B2BFH9	2e-21	B2BFH9_ARATH; Pheres1 (Fragment)
TrEMBL	B2BFI0	2e-21	B2BFI0_ARATH; Pheres1 (Fragment)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65330.1	4e-30	M-type_MADS family protein