PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp6g14000

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

bHLH

Protein Properties

Length: 208aa MW: 23525.8 Da PI: 10.0088

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp6g14000	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.7	4.2e-08	28	79	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+++ f+ Lr +lP ++K ++ + Av +Ik+ q Tp6g14000 28 KLLHRNIERQRRQEMAILFASLRNHLPLqY---IKGKRAMSDQVNGAVSFIKDTQ 79 567999********************66...99999999********9866 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.37E-11	23	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.17E-6	24	83	No hit	No description
PROSITE profile	PS50888	11.064	26	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-5	28	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-7	28	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MEHCNNPIKK RHQSYMSQER DETKTEKKLL HRNIERQRRQ EMAILFASLR NHLPLQYIKG 60 KRAMSDQVNG AVSFIKDTQT RIHGLAARRD ELKREIGPIF SDHSSKTGSG SGNGSSRSDS 120 ASILVQPCVS GIEVVVNSSV SGVEASPLSR VLEVLHEQGL EVISSLTARV NERFMYTIQV 180 KVYSFVSFNL TWLQQKLIEE LLHSSKGY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp6g14000

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006401909.2	1e-108	transcription factor bHLH120
Swissprot	Q9FLI0	1e-101	BH120_ARATH; Transcription factor bHLH120
TrEMBL	V4LLM0	1e-107	V4LLM0_EUTSA; Uncharacterized protein
STRING	XP_006401909.1	1e-108	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2968	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	1e-87	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]