PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp6g14050

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

Trihelix

Protein Properties

Length: 968aa MW: 107960 Da PI: 6.9467

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp6g14050	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	28.9	3.1e-09	180	233	22	75
trihelix 22 rrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 +rgk ++ + +ev++++ e+g++r +k kw+n+ ++++k++e+ek++ e+ Tp6g14050 180 GRGKTRAEKDREVAEYLNEHGVNRDSKIAGTKWDNMLGEFRKVNEWEKGGDREK 233 3567999999**************************************985443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.2E-7	146	231	No hit	No description
CDD	cd00180	5.23E-9	812	955	No hit	No description
SuperFamily	SSF56112	7.32E-13	816	955	IPR011009	Protein kinase-like domain
Gene3D	G3DSA:1.10.510.10	5.6E-7	817	954	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 968 aa Download sequence Send to blast
MGETTKGDAT EPSPNQISSP KDSSLDHQTP NPSLLHHQHH QHQPFLPSPI FIPTVSSPGA 60 PVIPKRPRFS SSGGLSPPQW KALPSPSTVP TAATIPSSPP PSTAVVAASS TETAGSSPPG 120 QEATNTEKQQ PESFQHKFRK GKYVSPVWKP NEMLLLARAW RIQYQKQGTG SGTGSGSGEG 180 RGKTRAEKDR EVAEYLNEHG VNRDSKIAGT KWDNMLGEFR KVNEWEKGGD REKFGKSYFR 240 LSPYERKQHR LPASFDEQVY QELALFMGPR TRAPTISRSV SGGATVDVTL TPPSVETLPP 300 PLHPPLMTSR DDDINNNRIT SIGRGKRLSL SIVGDDHPQY PYSHNIARGS GLFSSRSLYY 360 NPSCETIPSS SSSSSSLKDL RRIGKIRFTW EESVNLWAEE GEVDYGRIRV SGSSFLNADE 420 LTYLDDSMVA CTMESFEDGP LKGFSLDKFI SGQHLKVFGR KTSTSLSAPS PSVNMAGLFD 480 RAQLQHSEPI YKSISTLEFQ DPSEHCLSNL RVPAGNLPNL FELARYLQEP PAENLRFPLR 540 RDVYKDLPPG KELFFSTSST ELLDCRAITY DIISPIMSRL NPNNGFVISS KDSLIPLWDD 600 CVNRMVSQFC ELVVLRKPDS SSCVKNVQNQ WPNVMGFVNG FGLWRGEEAD KVREGAADPP 660 SLLVEKILWS YDDLPYILGY HAIGFTVTFC SLSRSSQDRV ICTDLYSFDV SSPSDRIKAL 720 VPCYRLASLL PLLADRCTVN HLCYNDFERI DHGDYVTEVT PHTVTKYYSS KRKWSGVKGI 780 YDFLAQRVPH AEHLDRPSEK ELSLSFKPRG VRVKPRNVDQ LIESLMCVTT ALVALHDLSF 840 MHRDMRWENV MRSAETEATT SAAEWFVCGF DQAAESPQLN PHRPAAEEEE EERGKHAPEM 900 ERGLHAVKVD VWGVGYMIKT CGLSNVPKML RELQGKCLEP NQENRPTAAD CFHHLLNLQV 960 QSASTSSY

Sequence ? help Back to Top

Protein Sequence Length: 968 aa Download sequence Send to blast

MGETTKGDAT EPSPNQISSP KDSSLDHQTP NPSLLHHQHH QHQPFLPSPI FIPTVSSPGA  60
PVIPKRPRFS SSGGLSPPQW KALPSPSTVP TAATIPSSPP PSTAVVAASS TETAGSSPPG  120
QEATNTEKQQ PESFQHKFRK GKYVSPVWKP NEMLLLARAW RIQYQKQGTG SGTGSGSGEG  180
RGKTRAEKDR EVAEYLNEHG VNRDSKIAGT KWDNMLGEFR KVNEWEKGGD REKFGKSYFR  240
LSPYERKQHR LPASFDEQVY QELALFMGPR TRAPTISRSV SGGATVDVTL TPPSVETLPP  300
PLHPPLMTSR DDDINNNRIT SIGRGKRLSL SIVGDDHPQY PYSHNIARGS GLFSSRSLYY  360
NPSCETIPSS SSSSSSLKDL RRIGKIRFTW EESVNLWAEE GEVDYGRIRV SGSSFLNADE  420
LTYLDDSMVA CTMESFEDGP LKGFSLDKFI SGQHLKVFGR KTSTSLSAPS PSVNMAGLFD  480
RAQLQHSEPI YKSISTLEFQ DPSEHCLSNL RVPAGNLPNL FELARYLQEP PAENLRFPLR  540
RDVYKDLPPG KELFFSTSST ELLDCRAITY DIISPIMSRL NPNNGFVISS KDSLIPLWDD  600
CVNRMVSQFC ELVVLRKPDS SSCVKNVQNQ WPNVMGFVNG FGLWRGEEAD KVREGAADPP  660
SLLVEKILWS YDDLPYILGY HAIGFTVTFC SLSRSSQDRV ICTDLYSFDV SSPSDRIKAL  720
VPCYRLASLL PLLADRCTVN HLCYNDFERI DHGDYVTEVT PHTVTKYYSS KRKWSGVKGI  780
YDFLAQRVPH AEHLDRPSEK ELSLSFKPRG VRVKPRNVDQ LIESLMCVTT ALVALHDLSF  840
MHRDMRWENV MRSAETEATT SAAEWFVCGF DQAAESPQLN PHRPAAEEEE EERGKHAPEM  900
ERGLHAVKVD VWGVGYMIKT CGLSNVPKML RELQGKCLEP NQENRPTAAD CFHHLLNLQV  960
QSASTSSY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp6g14050

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013709922.1	0.0	uncharacterized protein LOC106413724
TrEMBL	A0A3P6D2G1	0.0	A0A3P6D2G1_BRAOL; Uncharacterized protein
STRING	Bra022563.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8356	16	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	2e-07	Trihelix family protein