PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g14130
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MIKC_MADS
Protein Properties Length: 218aa    MW: 25335.4 Da    PI: 9.6264
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g14130genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.91.3e-28959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               k+ien + rqvtfskRr g++KKA+ELSvLCda+va i+fs++g+lye+ss
  Tp6g14130  9 KKIENVTSRQVTFSKRRRGLFKKAHELSVLCDAQVAAIVFSQSGRLYEFSS 59
               68***********************************************96 PP
2K-box65.71.6e-22881721498
      K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                 ++l++e++ + k+i+ L+ +qR+l+G++L+s+s+ eLq++ +q+eksl  +Rs+K el+ +q+++l +ke+el ee ++Lr++ 
  Tp6g14130  88 LQELKKEMDIMVKKIDLLEVNQRKLMGKSLSSCSMAELQEIGTQIEKSLYIVRSRKAELYADQLRKLNEKERELLEERRRLREEE 172
                6899******************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.0E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.23161IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-29323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-31377IPR002100Transcription factor, MADS-box
CDDcd002654.11E-42375No hitNo description
PfamPF003195.8E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.1888179IPR002487Transcription factor, K-box
PfamPF014861.2E-1989171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MVRGKIEIKK IENVTSRQVT FSKRRRGLFK KAHELSVLCD AQVAAIVFSQ SGRLYEFSSY  60
DMEKTIERYG KFSNDYYVAG RPKVELYLQE LKKEMDIMVK KIDLLEVNQR KLMGKSLSSC  120
SMAELQEIGT QIEKSLYIVR SRKAELYADQ LRKLNEKERE LLEERRRLRE EEARERLMQP  180
LLPLILHSGT GEAEGGCRTK HSSEVETDLF IGLPVARL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-19173173MEF2 CHIMERA
6byy_B5e-19173173MEF2 CHIMERA
6byy_C5e-19173173MEF2 CHIMERA
6byy_D5e-19173173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL42 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g14130
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018454345.11e-125PREDICTED: MADS-box protein AGL71
RefseqXP_018454346.11e-125PREDICTED: MADS-box protein AGL71
RefseqXP_018454347.11e-125PREDICTED: MADS-box protein AGL71
SwissprotQ9LT931e-111AGL71_ARATH; MADS-box protein AGL71
TrEMBLA0A397XIY71e-117A0A397XIY7_BRACM; Uncharacterized protein
TrEMBLR0GS211e-117R0GS21_9BRAS; Uncharacterized protein
STRINGXP_006281070.11e-118(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.31e-103AGAMOUS-like 71