PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g14260
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 237aa    MW: 25460.4 Da    PI: 4.9633
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g14260genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.21.1e-1471120155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s ++G+r +  +g+Wv+eIr+p++   ++r++lg++  +e+Aa+a++ a+++l+g
  Tp6g14260  71 SFFRGIRLR--NGKWVSEIREPRK---TTRIWLGTYPVPEMAAAAYDVAALALKG 120
                5699**975..6*********843...5************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.58E-1771128IPR016177DNA-binding domain
PROSITE profilePS5103219.24372128IPR001471AP2/ERF domain
SMARTSM003802.4E-2572134IPR001471AP2/ERF domain
PRINTSPR003678.2E-67384IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-2473128IPR001471AP2/ERF domain
PfamPF008472.6E-873120IPR001471AP2/ERF domain
CDDcd000189.97E-1673128No hitNo description
PRINTSPR003678.2E-6110130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MSNSSNSPTT GNKQPTTFRV SSIALPSSDH QSPQSSPGSS SSPSPTPRPS LSTDGSSSTR  60
KTATGLSGRH SFFRGIRLRN GKWVSEIREP RKTTRIWLGT YPVPEMAAAA YDVAALALKG  120
SDAVLNFPGL ALTYVAPASK SAPDIRAAAA RAAEMKQPDP GGAERVLDPV QPGKEEEEEQ  180
EAMSSSLEFM DEEAMLNMPT LLTEMAEGML MSPPRMTNLT MDDSPENHEG DNLWSYK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g14260
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0154781e-133AB015478.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSG15.
GenBankAK1764641e-133AK176464.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL24-25-F17.
GenBankAY0864431e-133AY086443.1 Arabidopsis thaliana clone 251466 mRNA, complete sequence.
GenBankCP0026881e-133CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865890.11e-104ethylene-responsive transcription factor ERF025
SwissprotQ9FJ901e-105ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A397XMQ61e-110A0A397XMQ6_BRACM; Uncharacterized protein
STRINGscaffold_801641.11e-104(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134571424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.12e-90ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]