PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g14830
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB_related
Protein Properties Length: 256aa    MW: 28206.7 Da    PI: 9.6788
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g14830genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.92e-125397147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
        Tp6g14830 53 RESWTEPEHDKFLEALQLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 97
                     789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.89E-1647103IPR009057Homeodomain-like
PROSITE profilePS5129413.75848102IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-651103IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-1851100IPR006447Myb domain, plants
SMARTSM007179.6E-1052100IPR001005SANT/Myb domain
PfamPF002494.4E-105397IPR001005SANT/Myb domain
CDDcd001677.90E-85598No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MTVPAIGTFT AAVSSSPTTS STAVAVADAT ATISSSEDLS KKIRKPYTIT KSRESWTEPE  60
HDKFLEALQL FDRDWKKIEA FIGSKTVIQI RSHAQKYFLK VQKSGTGEHL PPPRPKRKAS  120
HPYPQKAHKN AGAGANNNCS SSSENTPRPR SNKDTNEQGN LGHSLRVLPD FAQVYSFIGS  180
VFDPYASNHL QKLKKMDPID VETVLLLMRN LSINLSSPDF EDHRRLLSSY DIGSETATDH  240
GGVSKTLNKE PPEIST
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00560DAPTransfer from AT5G52660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g14830
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5503031e-151AY550303.1 Arabidopsis thaliana MYB transcription factor (At5g52660) mRNA, complete cds.
GenBankBT0020021e-151BT002002.1 Arabidopsis thaliana putative protein (At5g52660) mRNA, complete cds.
GenBankBT0258821e-151BT025882.1 Arabidopsis thaliana At5g52660 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024012565.11e-152protein REVEILLE 6 isoform X2
SwissprotQ8H0W31e-133RVE6_ARATH; Protein REVEILLE 6
TrEMBLV4LLA01e-151V4LLA0_EUTSA; Uncharacterized protein
STRINGXP_006401794.11e-151(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12902893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01520.18e-86MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]