PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g17480
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family WRKY
Protein Properties Length: 517aa    MW: 56740.5 Da    PI: 7.1887
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g17480genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY80.91.4e-25184241260
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                dDgynWrK  qK vkg efprsYY+Ct+++C+vkk  +rs  +++++ i Y+g+H+h+k
  Tp6g17480 184 DDGYNWRKIRQKRVKGIEFPRSYYKCTHPSCEVKKLFDRSP-EGQIICILYKGTHDHPK 241
                8****************************************.***************85 PP
2WRKY98.54.2e-31354412159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+W KYGqK+v+g+++prsYY+C  +gCpv+k+ver+++dpk++++tYeg+Hnh+
  Tp6g17480 354 LDDGYRWHKYGQKVVRGNPNPRSYYKCRATGCPVRKHVERASHDPKAFITTYEGKHNHD 412
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081120.277178242IPR003657WRKY domain
SuperFamilySSF1182902.88E-19180242IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-20182242IPR003657WRKY domain
SMARTSM007741.8E-20183241IPR003657WRKY domain
PfamPF031061.7E-18184240IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-35339414IPR003657WRKY domain
SuperFamilySSF1182908.37E-28346414IPR003657WRKY domain
PROSITE profilePS5081137.195349414IPR003657WRKY domain
SMARTSM007744.2E-35354413IPR003657WRKY domain
PfamPF031061.1E-24355412IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MDPDDSNRKD FPVDCSGGGA RYKLMSPAKL PMSRSSCITV PPVSPVLLSN SKAQPPSPTT  60
GSLFKPQALH ANSSSYTAGT IHKNILDDQN SSEFEFKPPA SSMFYAELDK HRSEAPLQFQ  120
SQGHSFKQSP SSAAEVAASS NEISRQTVVP HQTIPSGSGR SDPDESVQTS QNDSRGSAPM  180
ILADDGYNWR KIRQKRVKGI EFPRSYYKCT HPSCEVKKLF DRSPEGQIIC ILYKGTHDHP  240
KPQPSRLNSG GLVMPAQEGL DKHSSFDGRD EKGSSLYNLS PPIEQNGNPG VSPVSANDDG  300
GDVPMSNRNN DDVDDNDPFS KRRRLDGAME ITPLVKAIRE PRVVVQTLSE VDILDDGYRW  360
HKYGQKVVRG NPNPRSYYKC RATGCPVRKH VERASHDPKA FITTYEGKHN HDVPTAWSNN  420
NNNHDLSAPR FRPEETTDTV SVNLGVGIAS GGPDHTSNEH QQFIHGPPMG SCYANSLNAS  480
MNHQYNGSRE TADEAQTGDM SSSYPYPHNI GRIQSGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-34345414877Probable WRKY transcription factor 4
2lex_A3e-34345414877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1320324KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g17480
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931361e-168KM593136.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY20) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401438.10.0probable WRKY transcription factor 20
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLV4NAL90.0V4NAL9_EUTSA; Uncharacterized protein
STRINGXP_006401438.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31332867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein