PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp6g17600

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

M-type_MADS

Protein Properties

Length: 263aa MW: 30122.9 Da PI: 6.5035

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp6g17600	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	48.9	8.2e-16	3	44	2	43
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 ri n+ r +t+ kR++ + KKA+E S+LC+++ ++i+++++ Tp6g17600 3 RITNEKTRITTYKKRKACLYKKANEFSTLCGVKTCLIVYGQS 44 89*************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.2E-6	1	53	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.53E-16	1	88	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	13.652	1	44	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.25E-21	1	75	No hit	No description
Pfam	PF00319	6.7E-16	3	44	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MARITNEKTR ITTYKKRKAC LYKKANEFST LCGVKTCLIV YGQSRAGDER INDPELWPRD 60 ESKVREIISK YRDTASSSCT KTYSVQECLE KSKTKVEKMK YCPWDERLDK CSLNELYAAF 120 VVVGNKIQEA ANRNQHFPDA SWSNDQLSLF GYNQQCLEQH QLFPLSTMEQ NGFTFLPFPN 180 QMTSNTAEVA SFSNVTEPEI AQAMFYGSCS DDQYASVVQR TAYMETMQWG LGNSVFNNVK 240 TFADYPMRFG QVNDFENSAT TSM

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp6g17600

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009132360.1	1e-159	PREDICTED: agamous-like MADS-box protein AGL82
Swissprot	Q9FIM0	4e-47	AGL82_ARATH; Agamous-like MADS-box protein AGL82
TrEMBL	A0A397ZU83	1e-158	A0A397ZU83_BRACM; Uncharacterized protein
TrEMBL	M4EJJ9	1e-158	M4EJJ9_BRARP; Uncharacterized protein
STRING	Bra028965.1-P	1e-159	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5948	19	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	1e-148	M-type_MADS family protein

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]