PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp6g18400

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

NAC

Protein Properties

Length: 221aa MW: 25084 Da PI: 9.4727

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp6g18400	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	68.9	1.4e-21	10	95	57	128
NAM 57 ewyfFskrdkkyatgkrknra.............tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +fF++ +++y+tg+rk+r+ ++ +W++tgk+++v+ +g++ g+kk+Lv+y g+++++ekt+Wvmh+y+l Tp6g18400 10 SKHFFHRPSRAYTTGTRKRRKiiqtdhdseltgsSTETRWHKTGKTRPVMI-NGRQRGCKKILVLYtnYGKNRRPEKTNWVMHQYHL 95 679***************889*99988755789********.999*******6657999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	22.423	1	114	IPR003441	NAC domain
SuperFamily	SSF101941	2.35E-23	6	114	IPR003441	NAC domain
Pfam	PF02365	2.8E-7	12	95	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MFGVTNDGLS KHFFHRPSRA YTTGTRKRRK IIQTDHDSEL TGSSTETRWH KTGKTRPVMI 60 NGRQRGCKKI LVLYTNYGKN RRPEKTNWVM HQYHLGINEE EREGELVVSK IFYQTQPRQC 120 VGNINWSDHH GSSKDLIRIG AGDEISGVAA ALQSLGSGDV VSKQQLRGRS SRSGLEDVIM 180 GCTATCTEDE NSEAIPQQNA DWLTFPPFWN QTESDGQNRR F

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp6g18400

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB013392	1e-163	AB013392.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIK19.
GenBank	CP002688	1e-163	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018456809.1	1e-105	PREDICTED: NAC domain-containing protein 73 isoform X1
Refseq	XP_018456810.1	1e-105	PREDICTED: NAC domain-containing protein 73 isoform X1
Refseq	XP_018456811.1	1e-105	PREDICTED: NAC domain-containing protein 73 isoform X2
Swissprot	Q9M0F8	4e-66	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	V4KXM2	1e-104	V4KXM2_EUTSA; Uncharacterized protein (Fragment)
STRING	XP_006401302.1	1e-105	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14928	17	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56620.1	1e-103	NAC domain containing protein 99

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]