PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g19410
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family B3
Protein Properties Length: 381aa    MW: 43296.6 Da    PI: 5.8375
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g19410genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.17.7e-141161931698
                EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 v+p ++  ++ ++++ ++t +l+ ++g+ W+vk   + ++++ + +++GW++Fv +n+  +gDf++F++dg+++f  +v++fr
  Tp6g19410 116 KVIPSDHR-KY-YPTPLPQTAVLRKPEGNFWTVKW--TISQEEpISFKDGWSKFVIDNDPIDGDFLLFSYDGSRSF--LVSIFR 193
                58888886.44.3466899****************..777777799************************998888..9**998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100173.48E-12109193No hitNo description
Gene3DG3DSA:2.40.330.101.4E-15110193IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.7E-8111195IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-16114193IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-11116193IPR003340B3 DNA binding domain
PROSITE profilePS5086311.505117195IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MTFQTKCFTT MTSPIRGILV IFYPTLTLSK TLLYTLTLNT LCFVCTSPEA SLKISKKSYS  60
FFISLIKTQA RDHIVLPHLL GSVSLPDILE FCYVPDFFGF GYVCSLRVWL FVRSLKVIPS  120
DHRKYYPTPL PQTAVLRKPE GNFWTVKWTI SQEEPISFKD GWSKFVIDND PIDGDFLLFS  180
YDGSRSFLVS IFRDGLVVKP KAAIKIQEIS DDDEEDEIAG DDDYVMEREE DSNQNMITSL  240
SLGSSDDDNV DTTVCEVNKA RRSSKKGGSS QRKRAEYVGD PEMYLDDPSN PSFIATSCRR  300
TLVVAMQAIK DYNFKFGGTI KFIDGLGVLE GKVGEWKDRV VVYKWDEVCK RNNVKPEDSI  360
ICEVLREGGV VRTIKPHFIR N
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g19410
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126820.11e-134PREDICTED: B3 domain-containing protein At5g57720-like
SwissprotQ9FHH11e-98Y5772_ARATH; B3 domain-containing protein At5g57720
TrEMBLA0A3P6A2J91e-133A0A3P6A2J9_BRACM; Uncharacterized protein
TrEMBLM4DV741e-133M4DV74_BRARP; Uncharacterized protein
STRINGBra020417.1-P1e-134(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137971723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57720.14e-80B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]