PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g20540
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB
Protein Properties Length: 433aa    MW: 49007.6 Da    PI: 8.4697
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g20540genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.8e-17105151148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT++Ed +l+++v+q+G + W+ I++++  gR +kqc++rw+++l
        Tp6g20540 105 KGQWTADEDRKLIRLVRQHGERKWAMISEKLE-GRAGKQCRERWHNHL 151
                      799*****************************.*************97 PP
2Myb_DNA-binding53.36.3e-17158199245
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + W++eE+  lv+a+++ G++ W+ Ia+ ++ gRt++++k++w+
        Tp6g20540 158 DGWSEEEERVLVEAHTRIGNK-WAEIAKLIP-GRTENSIKNHWN 199
                      56*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.634100155IPR017930Myb domain
SuperFamilySSF466894.31E-29102198IPR009057Homeodomain-like
SMARTSM007171.3E-15104153IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-26106158IPR009057Homeodomain-like
CDDcd001676.53E-15108151No hitNo description
PfamPF139211.8E-18108166No hitNo description
SMARTSM007173.7E-14156204IPR001005SANT/Myb domain
PROSITE profilePS5129418.493156206IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-20159204IPR009057Homeodomain-like
CDDcd001674.54E-11160202No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MEHRRLVHGA APPLTAVERF LYGQKNDALC SKKQECSRDR HSPIVKKTAA IEIRNDNKEN  60
MTFGPRKEKH LVVHGRSSIG DMVVKDATRD YQNPTKKRPY KNLIKGQWTA DEDRKLIRLV  120
RQHGERKWAM ISEKLEGRAG KQCRERWHNH LRPDIKKDGW SEEEERVLVE AHTRIGNKWA  180
EIAKLIPGRT ENSIKNHWNA TKRRQNSKRK HKRQVNADNN DSDLSPAAKR PCILQDYIKS  240
IDNNVNNKDN DDNKNENSIS VLSTPNLDQI YSDGDSASSV LGDPYDEELV YLQNIFANHP  300
ISLENIGLSQ TSDEVNQSSS SGFMIKNPHP NSHNTVGAHH HDQAMFAVPA NTPSPHLPSD  360
IYLSCLLNGT TSSYSNPHFP SYSSSTSSTT VEQEGHSELL VPQANFASER REMDLIEMLA  420
GSIQGSNVSF PLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-441032052104MYB PROTO-ONCOGENE PROTEIN
1h88_C1e-4310320556158MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-4310320556158MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-441032052104C-Myb DNA-Binding Domain
1msf_C3e-441032052104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201212KRRQNSKRKHKR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for female gametophyte fertility. Acts redundantly with MYB64 to initiate the FG5 transition during female gametophyte development. The FG5 transition represents the switch between free nuclear divisions and cellularization-differentiation in female gametophyte, and occurs during developmental stage FG5. {ECO:0000269|PubMed:24068955}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g20540
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401032.10.0transcription factor MYB119
SwissprotQ9FIM40.0MY119_ARATH; Transcription factor MYB119
TrEMBLV4KWZ10.0V4KWZ1_EUTSA; Uncharacterized protein
STRINGXP_006401032.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42652656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.10.0myb domain protein 119
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]