PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g20600
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB_related
Protein Properties Length: 250aa    MW: 27397.7 Da    PI: 8.9607
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g20600genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.21e-14146190347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
        Tp6g20600 146 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 190
                      8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.6673287IPR017884SANT domain
SMARTSM007171.3E-63385IPR001005SANT/Myb domain
CDDcd001671.02E-63682No hitNo description
SuperFamilySSF466895.64E-103689IPR009057Homeodomain-like
PROSITE profilePS5129420.491139195IPR017930Myb domain
SuperFamilySSF466893.23E-17141195IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-17142194IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.3E-12143189IPR009057Homeodomain-like
SMARTSM007173.2E-13143193IPR001005SANT/Myb domain
PfamPF002494.0E-13146190IPR001005SANT/Myb domain
CDDcd001673.93E-11146191No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MEILRPTTSH VSRGNWLMEE TKSNVAVAAS CEVAATWTAA ENKAFENALA VYDDNTPDRW  60
QKVAAVIPGK TVSDVIRQYN DLEADVSSIE AGLIPVPGYI TSPFTLDWAG GGGGDGRNGF  120
KPGHIVGNKR SPAGRSPELE RKKGVPWTEE EHKLFLMGLK KYGKGDWRNI SRNFVITRTP  180
TQVASHAQKY FIRQHSGGKD KRRASIHDIT TVNLEDEASL ETNKSSIVGR EQQHNVSAIA  240
SGESISNLKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-17371021176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00568DAPTransfer from AT5G58900Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g20600
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1188910.0AK118891.1 Arabidopsis thaliana At5g58900 mRNA for putative I-box binding factor, complete cds, clone: RAFL21-22-M07.
GenBankAY5195330.0AY519533.1 Arabidopsis thaliana MYB transcription factor (At5g58900) mRNA, complete cds.
GenBankBT0054730.0BT005473.1 Arabidopsis thaliana clone U51211 putative I-box binding factor (At5g58900) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401027.11e-154transcription factor DIVARICATA
SwissprotQ8S9H71e-101DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLV4KWX61e-153V4KWX6_EUTSA; Uncharacterized protein
STRINGXP_006401027.11e-154(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122827100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-140Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]