PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g21780
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family B3
Protein Properties Length: 245aa    MW: 27802.5 Da    PI: 9.9109
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g21780genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.41.2e-1315102191
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                ffkv       +++ l +p +f  ++ ++k+ +k +tl++  g+ W++ l  +k+ g    yvl +GWk+ +k+ +L  gD + F +dg++ f+
  Tp6g21780  15 FFKVY--LPGKSRDDLEIPVSFN-SC-LPKPLPKNVTLRSIYGKIWKMAL--TKCCGDvekYVLVNGWKRIAKDEELAGGDLLEFDFDGSRYFN 102
                66766..67788899*******7.67.5678999****************..555555556*************************99866663 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.81E-189107IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-169107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.71613109IPR003340B3 DNA binding domain
CDDcd100171.12E-1213106No hitNo description
PfamPF023621.7E-1115103IPR003340B3 DNA binding domain
SMARTSM010192.2E-1215109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.2E-4120189IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-6120189IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MKQGRNSADD CLPKFFKVYL PGKSRDDLEI PVSFNSCLPK PLPKNVTLRS IYGKIWKMAL  60
TKCCGDVEKY VLVNGWKRIA KDEELAGGDL LEFDFDGSRY FNFCIYEPLT TCKRLRRSSP  120
IPSKVIKDYG LKFAESITIV DPLVKKFGTV AKKIKIQLNG RVFIKGYGTI LRRNGVKSSD  180
KMICELKKAG CPSGRINLRD IMEEGESNND KYSAIDFGTN HHIGPSTVRF KLFQLSELFR  240
TCTFV
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g21780
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400878.13e-87B3 domain-containing protein At5g60130
SwissprotQ9LST31e-49Y5142_ARATH; B3 domain-containing protein At5g60142
TrEMBLV4N9896e-86V4N989_EUTSA; Uncharacterized protein
STRINGXP_006400878.11e-86(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49471843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60142.15e-52B3 family protein