PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp6g22870

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

NAC

Protein Properties

Length: 236aa MW: 27043.4 Da PI: 5.4455

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp6g22870	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	136.8	1.4e-42	6	137	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 + GfrF Pt++el+ +yL++++eg++ ++++vi+ +d+++veP++Lp+ +++++ ++w+fF++r++++a+g r++r+t sgyWkatg+ +v+sk+ Tp6g22870 6 TIGFRFYPTEDELIAFYLRNQLEGTSnDSMHRVIPVLDVFEVEPSHLPNiageRCRGDAEQWFFFVPRQEREARGGRPSRTTGSGYWKATGSPGPVFSKD 105 68********************994445667***********656666666888************************************ PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +g+kkt+vfy+g+ap+g+kt+W m+ey++ Tp6g22870 106 NRMIGVKKTMVFYTGKAPTGRKTKWKMNEYKA 137 ****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.32E-46	4	162	IPR003441	NAC domain
PROSITE profile	PS51005	46.765	5	162	IPR003441	NAC domain
Pfam	PF02365	1.4E-22	7	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MAEELTIGFR FYPTEDELIA FYLRNQLEGT SNDSMHRVIP VLDVFEVEPS HLPNIAGERC 60 RGDAEQWFFF VPRQEREARG GRPSRTTGSG YWKATGSPGP VFSKDNRMIG VKKTMVFYTG 120 KAPTGRKTKW KMNEYKASEE TFNVSTIPKL RHEFSLCRVY ITSGSSRAFD RRPVANFQTE 180 RMLISDVAVD ETSFRVESSS PETYMSGGEH VDLSVNTEMV DGLTEPIWEW EQLNWP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	7e-32	5	167	20	173	NAC domain-containing protein 19
3swm_B	7e-32	5	167	20	173	NAC domain-containing protein 19
3swm_C	7e-32	5	167	20	173	NAC domain-containing protein 19
3swm_D	7e-32	5	167	20	173	NAC domain-containing protein 19
3swp_A	7e-32	5	167	20	173	NAC domain-containing protein 19
3swp_B	7e-32	5	167	20	173	NAC domain-containing protein 19
3swp_C	7e-32	5	167	20	173	NAC domain-containing protein 19
3swp_D	7e-32	5	167	20	173	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp6g22870

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018471145.1	1e-161	PREDICTED: NAC domain-containing protein 90
Swissprot	Q9FMR3	1e-150	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	V4KW25	1e-158	V4KW25_EUTSA; Uncharacterized protein
STRING	XP_006400742.1	1e-159	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1445	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-142	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]