PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g23230
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 218aa    MW: 24399.7 Da    PI: 4.2535
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g23230genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.7e-19757155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               ++y+GVr +k +g+WvAeIr p++   r r++lg+f++ae+Aa+a +aa  +l+g
  Tp6g23230  7 PKYTGVRKRK-WGKWVAEIRLPNS---RERIWLGSFDSAEKAARAFDAALYCLRG 57
               79*****999.**********933...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.9E-12757IPR001471AP2/ERF domain
CDDcd000183.11E-28767No hitNo description
SMARTSM003801.1E-30871IPR001471AP2/ERF domain
PROSITE profilePS5103221.773865IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-21866IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.3E-29866IPR001471AP2/ERF domain
PRINTSPR003672.7E-9920IPR001471AP2/ERF domain
PRINTSPR003672.7E-93147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MDATSSPKYT GVRKRKWGKW VAEIRLPNSR ERIWLGSFDS AEKAARAFDA ALYCLRGPGA  60
RFNFPDNPPE IPGGRSMTSQ QIQVAANRFA CEELLPPQQQ QEEQPSPRED KTEEGGGISA  120
RGEISGGSGG PTFGQVGEDN CNSNSINTTT YWPLMWEENL VVPSTSEEFG NFLMDDDSTN  180
LYFPSTQQQH ELSSDFYYDG ASVIEDDFSH YSINLWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-168651472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g23230
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400701.11e-120ethylene-responsive transcription factor ERF016
SwissprotQ9C5911e-104ERF16_ARATH; Ethylene-responsive transcription factor ERF016
TrEMBLV4LEM51e-118V4LEM5_EUTSA; Uncharacterized protein
STRINGXP_006400701.11e-119(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141671424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.11e-101ERF family protein