PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g23460
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family NAC
Protein Properties Length: 162aa    MW: 19370 Da    PI: 5.35
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g23460genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM60.74.8e-19101368128
        NAM   8 hPtdeelvveyLkkkvegkkleleevikev..diykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvgl 102
                h +dee++ +yL++kv g++  + ++i e+  ++y++ePw Lp+   +  + +ew+fF kr++ky    +++ +  +g+W a    +++ s  +ge++g 
  Tp6g23460  10 HISDEEIIEKYLRPKVFGEPSGIPSFIVELgeELYTIEPWLLPHvtDLILNPREWFFFGKRKRKYL---QSEGVHGEGVWVAVECCHALWSDeTGEEIGR 106
                568*****************8887788887668**********5233334788************7...56667889******99999988768899*** PP

        NAM 103 kktLvfy....kgrapkgektdWvmheyrl 128
                   + +y    + ++++ e t+W+m eyrl
  Tp6g23460 107 TSRFRYYyrnkDDETSDMEMTNWFMREYRL 136
                *****997654345566679********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100528.8153157IPR003441NAC domain
PfamPF023652.7E-128136IPR003441NAC domain
SuperFamilySSF1019417.19E-278156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MVFSPELKCH ISDEEIIEKY LRPKVFGEPS GIPSFIVELG EELYTIEPWL LPHVTDLILN  60
PREWFFFGKR KRKYLQSEGV HGEGVWVAVE CCHALWSDET GEEIGRTSRF RYYYRNKDDE  120
TSDMEMTNWF MREYRLFNTS TRTFYPGRQV LCKITCNDRN FV
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g23460
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001077770.15e-63pentatricopeptide (PPR) repeat-containing protein
RefseqNP_564823.17e-68NAC domain containing protein 27
TrEMBLA0A087HH586e-65A0A087HH58_ARAAL; Uncharacterized protein
TrEMBLA0A178WJS82e-66A0A178WJS8_ARATH; NAC027
TrEMBLQ9SH612e-66Q9SH61_ARATH; At1g64105
STRINGAT1G64105.13e-67(Arabidopsis thaliana)
STRINGA0A087HH581e-65(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM154271117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64105.13e-71NAC domain containing protein 27